Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H22
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   178   2e-45
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    29   2.7  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    29   2.7  
AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical ...    27   6.3  
U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione s-t...    27   8.4  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  178 bits (433), Expect = 2e-45
 Identities = 90/145 (62%), Positives = 107/145 (73%)
 Frame = -2

Query: 505 TRNMAEVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMA 326
           T++ A + E LKKKR FRKF YRGVDLDQLLDM  EQ  +L+         RGLKRK +A
Sbjct: 3   TQDDAHLAE-LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLA 61

Query: 325 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHX 146
           L+ K+++AKK A   EKP  VKTHLR+MII+PE+VG ++GIYNGK FNQ EIKPEMIG  
Sbjct: 62  LIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFY 121

Query: 145 LGE*XGTXKPXKHGRPGIGATHSDK 71
           LGE   + KP KHGRPGIGATHS +
Sbjct: 122 LGEFAISYKPVKHGRPGIGATHSSR 146


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 486 STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 385
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 486 STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 385
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical
           protein F56A11.6 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 25/103 (24%), Positives = 45/103 (43%)
 Frame = -1

Query: 320 QEAASRQERGSSE*EARDREDSLEKHDHRSRDGRFNCRHLQRKNF*PG*NQA*DDXXXXX 141
           Q++  R +  S +  +R R+D  ++   RSR  R + R  +R        +  D      
Sbjct: 294 QKSVDRDKTRSDKDRSRSRKDREDRDRERSRKDRED-RDRERSR-----KEREDRSRKDR 347

Query: 140 XXXRHXQAXKARETRXRCDTQRQGAXRDKESGENHREAKRNTK 12
                 ++ K RE R R D +R  + +D+E  +  R+  R+ K
Sbjct: 348 EDRERERSRKEREDRSRKDRER--SRQDREDRDRDRDRDRSRK 388


>U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione
           s-transferase protein23 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 516 LSNKQETWLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN 385
           L  K  T +++     K  +   +L GEL+ I  L C  +N  N
Sbjct: 97  LRTKYFTMIKTDYEDGKEAYITETLPGELLRIEKLFCTFNNGEN 140


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +3

Query: 102 LPCFXGLXVPXHSPRXWPIISGLISTWLKVFPL*MPTIEPT 224
           LP   G+  P HSP  W +       W+ +  +  P +  T
Sbjct: 394 LPMIIGVLCPNHSPEEWAVFYTSGGIWVIIMNIPFPFLVTT 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,707,955
Number of Sequences: 27780
Number of extensions: 187578
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)