Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H19
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     36   0.022
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    32   0.47 
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530...    31   0.62 
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653...    30   1.4  
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916...    28   5.8  

>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = -2

Query: 251  NCVHLNIDIDITSQVEEQKETSDKIKKRLNDCLLSLMKIDRVLDLGVENLEFWQKNNLSG 72
            N  ++  D  +   +EE   + D      ND     MK    + L VE +E  +K N   
Sbjct: 792  NADNVQRDASLRKNIEESSASLDGADDEKNDMAYCGMKEANTMSLHVETME--EKTN--- 846

Query: 71   YISEKRTVEGKTYSDYEK 18
            +  EK +V GK Y+++EK
Sbjct: 847  FTPEKSSVPGKNYTEFEK 864


>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 233  IDIDITSQVEEQKETSDKIKKRLNDCLLSLMKI 135
            +D  +   +E  +ET   IKK+L DCLLS++ I
Sbjct: 2142 VDPQLQQDLETCQETPMAIKKKLTDCLLSVLSI 2174


>02_01_0708 -
           5298456-5298664,5299615-5299768,5300209-5300301,
           5300644-5300847,5302034-5302174,5302723-5302827,
           5303485-5303874,5304573-5304713,5304756-5304845,
           5305779-5306288
          Length = 678

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 596 ESIEQLQKFYDEKRSSRKMKLQLSFDLDASTSDSFNDRAENGTPT 462
           ++I    +F  EK  S+++  Q++ D+D + +D+    A N TPT
Sbjct: 299 QNISASLEFSTEKSISKEVSQQVTSDIDVTMADANASNARNSTPT 343


>11_01_0780 -
           6531579-6531608,6531732-6532064,6533219-6533325,
           6534267-6534316,6535110-6537065,6537458-6538209
          Length = 1075

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 206 EEQKETSDKIKKRLNDCLLSLMKIDRVLDLGVENLEFWQ--KNNLSGYISEKRTVEGK 39
           E  +E S +I +      L ++ I R+L   V+NLE W   + +LS  ++   T E K
Sbjct: 330 ERLREVSTEIVRNCGGLPLGIINIARLLASEVDNLELWHHVQKHLSSSMATNHTSEDK 387


>03_01_0009 -
           89127-89924,90090-90518,90582-90716,91102-91382,
           91634-91809,91899-92011,92157-92278,92375-92594
          Length = 757

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 554 SSRKMKLQLSFDLDASTSDSFN-DRAENGTPTFADELKI 441
           + +K++L+  F L  ++  +F  +  +N T +FAD LKI
Sbjct: 417 ADKKLRLEKLFVLQGNSYSTFTWEEIDNATSSFADNLKI 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,989
Number of Sequences: 37544
Number of extensions: 221150
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)