Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H18
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    31   0.062
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   1.3  
SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz...    25   3.1  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    24   7.1  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   7.1  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    23   9.4  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 30.7 bits (66), Expect = 0.062
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +3

Query: 48  QGVSLPSSSLHDWCMTASCAQKYRVH 125
           +G+++P +   +W + + C++KYR H
Sbjct: 158 KGIAIPDAETFEWLVCSECSEKYRDH 183


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 146  NILEGSRMHPILLRARCCHTP 84
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 272 VCVTLASAAIQRSALEPIPDKFSGLQGCYXQGVRWCP 162
           V V +A + +     E I D FSG  G   Q  ++CP
Sbjct: 59  VAVAIAKSVVDFIQPELIIDAFSGCGGNTIQFAKYCP 95


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 272 VCVTLASAAIQRSALEPIPDKFSGLQGCYXQGVRWCPSL*FCNILEG 132
           +C+ +  A  + +  + I  +   + G   +G+R C  L F  ILEG
Sbjct: 431 LCLYIQMALCEETLEKHINRRNKHIHGVMSKGLRNCYILLFARILEG 477


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 90 YTNRVKMSWAETXPVCTFTKAEEN 19
          YTN   +SW +T  V    KA E+
Sbjct: 24 YTNHAVVSWNQTNEVIGLYKANEH 47


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 72  SLHDWCMTASCAQKYRVHSASFEYVTES 155
           S   WC+ A+C    R HS + + +  +
Sbjct: 430 SPESWCILANCFSLQREHSQALKCINRA 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,360,344
Number of Sequences: 5004
Number of extensions: 24262
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)