Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_H18
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0557 + 30219270-30219764 30 0.40
07_03_1242 + 25113464-25114150 28 1.6
02_01_0254 - 1669461-1669590,1669833-1672318 28 1.6
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 2.2
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 27 5.0
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 26 6.6
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 26 6.6
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456... 26 6.6
01_01_0638 - 4819365-4819685,4819702-4819882,4820018-4820073,482... 26 6.6
02_01_0679 - 5048653-5051394 26 8.7
>01_06_0557 + 30219270-30219764
Length = 164
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 239 RSALE-PIPDKFSGLQGCYXQGVRWCPSL*FCNILEGSRMHPILLR 105
R+A+E P PD+ L G + RW PS+ C +EG+ P +R
Sbjct: 19 RAAVEGPTPDQAWALLGDFCSLHRWVPSVQTCRRVEGAEGQPGCVR 64
>07_03_1242 + 25113464-25114150
Length = 228
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 163 LPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDT 53
LP V Y C + C+ D IH++C D RDT
Sbjct: 35 LPITGVGY----RCNHHHCS-DFTIHEACADRFARDT 66
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 117 DTSARTMLSYTNRVKMSWAETXPVCTFTKAEENPNI 10
D SART++ T RVK W + V K ++N +I
Sbjct: 830 DDSARTVMKITKRVKTGWGQRGNVYE-NKQQQNDDI 864
>01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 211 LSGIGSKAERWIAAEAKVTQTQKTSVFNDMLVTNHRPAEF 330
LS S A+ W + K+ V D+ +TN PA+F
Sbjct: 1005 LSARNSIAQSWTRGKGKMVHPLDRFVRQDICITNKNPADF 1044
>01_03_0278 - 14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 296 SLKTLVFCVCVTLASAAIQRSALEPIPDKFSGLQGCYXQGVRWCPSL 156
SL L C C +LAS+++ S P +S LQG + CP+L
Sbjct: 960 SLVKLTLCYCKSLASSSLPNS-----PQAYSSLQGLI---IMECPAL 998
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 244 IAAEAKVTQTQKTSVFNDML 303
+A EAK T+ Q+ V+NDM+
Sbjct: 352 VATEAKETRHQREKVYNDMM 371
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 311 FVTNMSLKTLVFCVCVTLASAAIQRSALEPIPDKFSGL 198
F+T + ++FC A + A E +P +F GL
Sbjct: 428 FLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGGL 465
>01_07_0227 +
42144437-42144446,42145059-42145428,42145528-42145649,
42145767-42145935,42146236-42146545,42146742-42146825,
42147012-42147083,42147780-42147821,42147931-42148020,
42148106-42148213,42148292-42148384,42148540-42148619,
42148701-42148953,42151222-42151236
Length = 605
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 139 SKEAECTRYFCAH 101
SK A+C RYFC H
Sbjct: 199 SKLAQCDRYFCGH 211
>01_01_0638 -
4819365-4819685,4819702-4819882,4820018-4820073,
4820107-4820148,4820484-4820639,4820681-4820809,
4821072-4821254,4821374-4821524,4821670-4821848
Length = 465
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 302 NMSLKTLVFCVCVTLASAAIQRSALE 225
+M LK L+FC+C+ L S I ++LE
Sbjct: 342 SMLLKKLIFCMCI-LCSDMITHTSLE 366
>02_01_0679 - 5048653-5051394
Length = 913
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 308 VTNMSLKTLVFCVCVTLASAAIQRSALEPIPDKFSGLQGCYXQGVR 171
V N L TL+ C LA ++ S L+ IP+ L G+R
Sbjct: 564 VANYQLLTLLISRCKYLAVLELRDSPLDKIPENIGDLFNLRYLGLR 609
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,150,440
Number of Sequences: 37544
Number of extensions: 171422
Number of successful extensions: 423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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