Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H18
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49071-2|CAA88874.1|  458|Caenorhabditis elegans Hypothetical pr...    32   0.12 
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    26   5.8  
AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical ...    26   7.7  

>Z49071-2|CAA88874.1|  458|Caenorhabditis elegans Hypothetical
           protein T22C8.2 protein.
          Length = 458

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -3

Query: 180 GSSMVSFPLIL*HTRRKQNAPD---TSARTMLSYTNRVKMSWAETXPVCTFTKAEENP 16
           G S   FP I  +  +KQN P+    ++  +++ T R+K ++  +  +  FTK E NP
Sbjct: 240 GESTALFPSIYLYPSQKQN-PEYNFVNSGALITETKRIKRNYCPSCEIHVFTKIEYNP 296


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
            family protein 2 protein.
          Length = 1551

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 315  MIRNQHVVENASLLCLRHFSFGGDPALCFG 226
            ++RN     N  LL ++  SF  +P  CFG
Sbjct: 1208 IVRNLAKAYNPELLAVKGISFAVEPGECFG 1237


>AL132860-1|CAB60513.2|  616|Caenorhabditis elegans Hypothetical
           protein Y56A3A.2 protein.
          Length = 616

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 172 DGVLPFDSVTYSKEAECTRYFCAHDAVIHQ 83
           D  LP+  V   +E + T+Y C H   + Q
Sbjct: 433 DDALPYGGVAQPEEKKITKYSCLHARYVVQ 462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,625,813
Number of Sequences: 27780
Number of extensions: 138853
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)