Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H14
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical pr...    57   1e-08
AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical ...    29   4.5  

>L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK1236.7 protein.
          Length = 324

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = -2

Query: 176 RGKFIYISQSELESIAKFIKQRGRVSIAELAECSNDLINL 57
           RGKFIYIS  E  ++AKFI QRGRVSI E+AE SN LI L
Sbjct: 278 RGKFIYISDEEFAAVAKFINQRGRVSIHEIAEQSNRLIRL 317



 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = -1

Query: 402 YEAMKAAFSIXXXXXXXXXXXXXXXXXXXFIGYIKTQKVVLLEDLAAHFKLKTQAAIDRI 223
           Y AMKA+F+I                   F+ Y+KT KVV +++L++HF LK++ A++R+
Sbjct: 203 YLAMKASFAIEEEGTDAIEGEEAENLIRDFVDYVKTNKVVNIDELSSHFGLKSEDAVNRL 262

Query: 222 TELQASGELTGVIDXQGK-IHLYFTK*TRIDCKIHQAKRTGVH 97
                 G + GV+D +GK I++   +   +   I+Q  R  +H
Sbjct: 263 QHFIEEGLVQGVMDDRGKFIYISDEEFAAVAKFINQRGRVSIH 305


>AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.10 protein.
          Length = 69

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 793 CCPKGWRTRSSTSC*ESKGADESECC 716
           CCP GW       C  +   DE  CC
Sbjct: 39  CCPDGWEFGGRAPCPANPNMDEVWCC 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,714,571
Number of Sequences: 27780
Number of extensions: 192392
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)