Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H12
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.4  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    26   4.5  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   5.9  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    26   5.9  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 495 LEHLYDRCL*NLTGLARCFQGYLFPSRNRLNRSRLAEHNRSIAPTKPAP 349
           L+H    CL   TG+    + Y+    N + R+R A H  S  P   +P
Sbjct: 196 LKHYLTTCLCRETGVQGFLKVYMQAQPNSIERARQAAHLISSVPKDISP 244


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 670 RKQVNGLLQHTDSPYIRAXGFMYIRY 593
           ++  NGLL+H +SP+I+  G +   Y
Sbjct: 111 KRDENGLLRHFESPHIQCAGVVVNDY 136


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 597 DIHNHQLIYLTGM--WITLKMK-KRLTPVLEVVHPQLLEHL 484
           ++H    I  TG   W   K + +RLTP  E+ H QLL H+
Sbjct: 648 EMHIFPQILETGKCRWSDCKYEIQRLTPASELSHYQLLSHI 688


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 453 LARCFQGYLFPSRNRLNRSRLAEHNRSIA 367
           L +CFQ + F S+N ++ SRL+  ++ +A
Sbjct: 633 LLKCFQVFFFKSKN-ISSSRLSSFSKRLA 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,735
Number of Sequences: 5004
Number of extensions: 26865
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)