Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H12
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464...    84   1e-16
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    56   3e-08

>05_01_0538 +
           4646772-4647059,4647462-4647542,4647819-4647890,
           4648458-4649321
          Length = 434

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 39/97 (40%), Positives = 57/97 (58%)
 Frame = -1

Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
           YK +T +LT KQ++GLL+H DSPYIRA GF+Y+RY   P  L               P  
Sbjct: 70  YKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKILWTWYEPYLKDDEEFSP-G 128

Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQI 407
             G  TT+G  VR +++   +F +L PR+P+P+ +Q+
Sbjct: 129 SNGRMTTMGVYVRDLILGQYYFDSLLPRVPLPVIRQV 165


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 32/129 (24%)
 Frame = -1

Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRA-------------------------XGFMYIRY 593
           YK +T +LT KQ++GLL+H DSPYIRA                          GF+Y+RY
Sbjct: 70  YKFFTMKLTVKQMHGLLKHPDSPYIRADGLLRAECNVEDLLNIVDFAKSLHYVGFLYLRY 129

Query: 592 TQPPADLXXXXXXXXXXXXXXDPRAGGGASTTIGALVRQMLV-------KLDWFSTLFPR 434
              P  L               P    G  TT+G  VR +L+       K  +F +L PR
Sbjct: 130 VAEPKTLWSWYEPYIKDDEEFSP-GSNGKMTTMGVYVRDLLLGQVHSEQKRYYFDSLLPR 188

Query: 433 IPVPIQKQI 407
           +P+PI +Q+
Sbjct: 189 VPLPILRQV 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,257
Number of Sequences: 37544
Number of extensions: 200629
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)