Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_H12
(697 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processi... 132 9e-31
BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processi... 132 9e-31
BC107801-1|AAI07802.1| 383|Homo sapiens PRPF38B protein protein. 132 9e-31
BC040127-1|AAH40127.1| 303|Homo sapiens PRPF38B protein protein. 132 9e-31
BC024275-1|AAH24275.1| 465|Homo sapiens Unknown (protein for IM... 132 9e-31
BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for IM... 132 9e-31
BC007757-1|AAH07757.1| 465|Homo sapiens PRPF38B protein protein. 132 9e-31
AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processi... 132 9e-31
AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processi... 132 9e-31
AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processi... 132 9e-31
AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processi... 132 9e-31
AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens ... 132 9e-31
BC053838-1|AAH53838.1| 190|Homo sapiens PRPF38B protein protein. 79 2e-14
AL591719-4|CAH72068.1| 190|Homo sapiens PRP38 pre-mRNA processi... 79 2e-14
AL160171-5|CAI12932.1| 190|Homo sapiens PRP38 pre-mRNA processi... 79 2e-14
>BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>BC107801-1|AAI07802.1| 383|Homo sapiens PRPF38B protein protein.
Length = 383
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>BC040127-1|AAH40127.1| 303|Homo sapiens PRPF38B protein protein.
Length = 303
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>BC024275-1|AAH24275.1| 465|Homo sapiens Unknown (protein for
IMAGE:4122390) protein.
Length = 465
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for
IMAGE:3538108) protein.
Length = 474
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>BC007757-1|AAH07757.1| 465|Homo sapiens PRPF38B protein protein.
Length = 465
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 22 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 81
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 82 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 121
>AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 22 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 81
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 82 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 121
>AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ10330 fis, clone NT2RM2000624, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 546
Score = 132 bits (320), Expect = 9e-31
Identities = 62/100 (62%), Positives = 72/100 (72%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL D +A
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDVKA 192
Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
GGG TIG ++R L KL+WFSTLFPRIPVP+QK I+Q+
Sbjct: 193 GGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQ 232
>BC053838-1|AAH53838.1| 190|Homo sapiens PRPF38B protein protein.
Length = 190
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/42 (80%), Positives = 37/42 (88%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADL 572
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
>AL591719-4|CAH72068.1| 190|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 190
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/42 (80%), Positives = 37/42 (88%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADL 572
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
>AL160171-5|CAI12932.1| 190|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 190
Score = 78.6 bits (185), Expect = 2e-14
Identities = 34/42 (80%), Positives = 37/42 (88%)
Frame = -1
Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADL 572
YKL+T +LTRKQV GL+ HTDSPYIRA GFMYIRYTQPP DL
Sbjct: 133 YKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDL 174
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,065,124
Number of Sequences: 237096
Number of extensions: 1095446
Number of successful extensions: 2555
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2543
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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