Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H12
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical ...   114   7e-26
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    29   2.4  
AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    28   5.5  
U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center...    27   9.7  

>AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.2 protein.
          Length = 327

 Score =  114 bits (274), Expect = 7e-26
 Identities = 54/100 (54%), Positives = 66/100 (66%)
 Frame = -1

Query: 697 YKLYTXRLTRKQVNGLLQHTDSPYIRAXGFMYIRYTQPPADLXXXXXXXXXXXXXXDPRA 518
           Y+L+  +++RKQ+  +L    S YIR  GFMYIRYTQPPADL              DPR+
Sbjct: 141 YRLFNLKISRKQLISMLNSRQSVYIRGLGFMYIRYTQPPADLWYWLEPYLDDDREIDPRS 200

Query: 517 GGGASTTIGALVRQMLVKLDWFSTLFPRIPVPIQKQIEQK 398
           GGG   T G LVR M+ KLDW+ TLFPRIPVPIQK I++K
Sbjct: 201 GGGDLMTFGQLVRTMINKLDWYGTLFPRIPVPIQKDIDEK 240


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 405 SICFWMGTGILGNNVLNQSSFTSICRTSAPIVVDAPPPAR 524
           S+  WM +G++   V++Q     I  T  PI+ DA  P R
Sbjct: 718 SVTEWMDSGVVEEEVISQEDQGDIRYTIQPILSDAEQPIR 757


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 393 IYFCSICFWMGTGILGNNVLNQSSFTSI 476
           ++FCS+C      IL   VLNQ SFT +
Sbjct: 372 LFFCSLCHGGEKSILPARVLNQWSFTEL 399


>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 465 FTSICRTSAPIVVDAPPPARG 527
           F   C  SAPI+V+ PPP  G
Sbjct: 128 FGPACAPSAPIIVNGPPPCFG 148


>U55363-8|AAA97966.1|  829|Caenorhabditis elegans Germinal center
           kinase family protein2 protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 594 IHNHQLIYLTGMWITLKMKKRLTPVLEVVHPQLL 493
           ++ H L+ LT   +TLKM K L  + E   P+ L
Sbjct: 546 VYRHDLVALTQKNLTLKMSKNLNKIPEKYVPKRL 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,624,610
Number of Sequences: 27780
Number of extensions: 164819
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)