Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_H11
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 5.9
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 7.8
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 26 7.8
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 7.8
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 7.8
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 26 7.8
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 26 7.8
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 7.8
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.8
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 576 DTNNTNRKLYKRQMNYKNK 520
D NN +RK K+QMNY+ +
Sbjct: 416 DVNNVDRKCVKKQMNYREE 434
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 771 INELKSCKYKDKNKTLKELKWYEKRAAFRTEARKKLEHELFGE 643
I +L S Y D+N + E++ EARK+L E+F +
Sbjct: 28 IAQLSSINYADRNVQAALEQLSERKFKNEREARKQLPFEVFSD 70
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 429 KNYIIISSFLW*TKKKFYPISSMPVKYVFIFCFCNSFVVYIIFCLYYLY 575
KN ++ + + F P S+ VKY C ++Y+++C +Y+Y
Sbjct: 16 KNSSLVQNICFDRVPLFIPRLSLTVKY----CLAVKLLIYLLYC-WYIY 59
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 636 HCFLQIVHAPVSS*PLFERLP-FSHTTSILS 725
HC+LQ+ H P L ERLP S T +I +
Sbjct: 356 HCYLQLSHLPAEI--LKERLPGISETAAIFA 384
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 429 KNYIIISSFLW*TKKKFYPISSMPVKYVFIFCFCNSFVVYIIFCLYYLY 575
KN ++ + + F P S+ VKY C ++Y+++C +Y+Y
Sbjct: 16 KNSSLVQNICFDRVPLFIPRLSLTVKY----CLAVKLLIYLLYC-WYIY 59
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 429 KNYIIISSFLW*TKKKFYPISSMPVKYVFIFCFCNSFVVYIIFCLYYLY 575
KN ++ + + F P S+ VKY C ++Y+++C +Y+Y
Sbjct: 16 KNSSLVQNICFDRVPLFIPRLSLTVKY----CLAVKLLIYLLYC-WYIY 59
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 605 IRRKYQLALLALFSPNSSCSSFF 673
+R+ QLA+L LF+P S S+ F
Sbjct: 666 LRKNAQLAILKLFAPQLSSSTHF 688
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 YPISSMPVKYVFIFCFCNSFVVYIIFCLYYLY-PWH 584
+ +++MP++ +F C + ++ +F Y++Y PWH
Sbjct: 143 FSLATMPLRNIFKNC-AHYHLLSGLFLAYFIYGPWH 177
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -3
Query: 780 KVVINELKSCKYKDKNKTLKELKWYEKRAAFRTEARKKLEHELF 649
++V ELK+ K K L +++ Y RA + + R+K+E E+F
Sbjct: 569 RLVRQELKT---KQKGDLLSKIQSY--RAGYTVQERRKIESEMF 607
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 482 PNKFNASQVCFYFLFL*FICRLYNFLFV 565
PNKF+ + YF F F+C Y F ++
Sbjct: 74 PNKFSI-YIYIYFFFYSFLCSPYLFKYI 100
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 429 KNYIIISSFLW*TKKKFYPISSMPVKYVFIFCFCNSFVVYIIFCLYYLY 575
KN ++ + + F P S+ VKY C ++Y+++C +Y+Y
Sbjct: 16 KNSSLVQNICFDRVPLFIPRLSLTVKY----CLAVKLLIYLLYC-WYIY 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,438
Number of Sequences: 5004
Number of extensions: 57692
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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