Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_H10
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21324-17|AAK93840.2| 222|Caenorhabditis elegans Hypothetical p... 176 2e-44
AC024788-2|AAF60613.1| 163|Caenorhabditis elegans Hypothetical ... 31 0.66
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 31 0.88
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 30 2.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.7
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 29 4.7
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 29 4.7
Z83238-11|CAE11318.1| 326|Caenorhabditis elegans Hypothetical p... 28 6.2
>U21324-17|AAK93840.2| 222|Caenorhabditis elegans Hypothetical
protein C35D10.1 protein.
Length = 222
Score = 176 bits (428), Expect = 2e-44
Identities = 81/177 (45%), Positives = 126/177 (71%), Gaps = 1/177 (0%)
Frame = -2
Query: 578 IEGRVFPPEDPNNSNWQLDTRVHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMY 399
+EG + P N + W R+H+N G+Y+GFVR+D TF V +P+G+Y+V+I + D+++
Sbjct: 32 VEGEIALPSTRNCAKWSAGARIHLNHGQYMGFVRQDCTFRVDFVPTGTYIVQIENTDFVF 91
Query: 398 EPVRVEINSKGKYRARKVNYVQTSQVIQVPYPLRMKPVTKFRYFQVREQWRLTDFLFNPM 219
EP+RV+I SKGK RARK+ +Q + V +PYPLR+ RYF+ RE+WR+TD LF+PM
Sbjct: 92 EPIRVDITSKGKMRARKLTILQPNNVNTLPYPLRLSARGPARYFRKREEWRITDMLFSPM 151
Query: 218 VVMMVLPLFLIMILPKM-MNDPETKEDLKQISXLAKIADVPEMXEMFTKSFXRGSVP 51
V+M+V+PL +++ILPKM NDPE K++++ + + K+ D+P++ EM +F GS P
Sbjct: 152 VLMLVVPLVVMLILPKMTANDPELKKEMENMQ-MPKV-DMPDVGEMMA-NFFGGSAP 205
>AC024788-2|AAF60613.1| 163|Caenorhabditis elegans Hypothetical
protein Y46E12A.2 protein.
Length = 163
Score = 31.5 bits (68), Expect = 0.66
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 583 MLSKAVCFLLKIPTTAIGNWT 521
+ S+ VCF +KIP A+G WT
Sbjct: 9 LFSRHVCFEMKIPVRAVGRWT 29
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +1
Query: 421 ISTTYEPDGKLCTTNVPSSRTKPMYSPPLT*TRVSNCQLLLLGSSGGNTRPSITCPISSS 600
ISTT EP+ + T + SS Y P T S+ ++ ++G ++ SS
Sbjct: 477 ISTTIEPNAQSTTYEMESSTVSVTYEPETTSLETSSTKVSSTTATGEPASTTMEANEHSS 536
Query: 601 VRSLAQ*TLPSTN 639
T+P+TN
Sbjct: 537 TFETESSTVPATN 549
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = -1
Query: 366 QIQS*KSQLRSNFTSHSSTLPAEDETSHQIQIFSSSGTMEAH*LLVQP 223
Q+Q + S+ +S SS+ AE +HQ+++ S+S ++E++ V P
Sbjct: 217 QVQQHRPAASSSSSSSSSSASAEHHPTHQVRVPSASSSIESNEQRVVP 264
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 179 LPKMMNDPETKEDLKQISXLAKIADVPEMXEMFTKSF-XRGSVPKPTXDESETNEEKT 9
+P+ PETK+D+ +I + K + + E S + +V KP D+ +++ T
Sbjct: 12844 VPEKAAGPETKKDVSEIEEVPKKKTIKKKTEKSDSSISQKSNVLKPADDDKSKSDDVT 12901
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 179 LPKMMNDPETKEDLKQISXLAKIADVPEMXEMFTKSF-XRGSVPKPTXDESETNEEKT 9
+P+ PETK+D+ +I + K + + E S + +V KP D+ +++ T
Sbjct: 12844 VPEKAAGPETKKDVSEIEEVPKKKTIKKKTEKSDSSISQKSNVLKPADDDKSKSDDVT 12901
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glutamate
receptor protein1 protein.
Length = 1025
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 15 FFICFAFVXRWFWH*TPXEAFXKHFXHFRHISYFC 119
F CF F + W +P F F F HI C
Sbjct: 974 FLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPLC 1008
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 15 FFICFAFVXRWFWH*TPXEAFXKHFXHFRHISYFC 119
F CF F + W +P F F F HI C
Sbjct: 974 FLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPLC 1008
>Z83238-11|CAE11318.1| 326|Caenorhabditis elegans Hypothetical
protein T08G3.12 protein.
Length = 326
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = -3
Query: 652 YTFRHSCSAMFIALVI*--LKKKSDMLSKAVCFLLKIPTTAIGNWTPAFTLTEANTSVLS 479
Y F H+ +F + +I K+ L KA+C + IPT AI + P L +
Sbjct: 213 YFFYHTVKYLFKSKIISESTKRLQKQLFKALCIQVTIPTIAI--FIPCVYLNTSAALDHL 270
Query: 478 EKMGHLWCIIYRLVHTSSKSYTQTTCTNPCVSKSILK 368
+ + + II+ +H S + T T + K+++K
Sbjct: 271 DMIENNTAIIFLSLHGSMSTIT-TLLVHKSYRKAVIK 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,011,627
Number of Sequences: 27780
Number of extensions: 346176
Number of successful extensions: 1026
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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