Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H10
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.76 
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   3.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 221 MVVMMVLPLFLIMILPKMMNDPETKEDL 138
           +V + VLP FL++  PK   D E +E++
Sbjct: 339 VVFIQVLPRFLLIERPKKDEDEEEEEEV 366


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 543 VGIFRRKHTAFDNMSDFFFSQITSAINIAEHECRNVYYDD 662
           +G+ R+K T FD+  D+       AIN  ++E R+  + D
Sbjct: 212 IGLQRKKDTTFDDYLDY-------AINPFDYEKRSTDFQD 244


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 543 VGIFRRKHTAFDNMSDFFFSQITSAINIAEHECRNVYYDD 662
           +G+ R+K T FD+  D+       AIN  ++E R+  + D
Sbjct: 212 IGLQRKKDTTFDDYLDY-------AINPFDYEKRSTDFQD 244


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 281 KFRYFQVREQWRLTDFLF 228
           K   FQV+ QW+  D+ F
Sbjct: 28  KANIFQVKYQWKYFDYNF 45


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 385 SKSILKANTELEKSITFKLHK 323
           SKS +KAN++ E S + KL +
Sbjct: 561 SKSFIKANSQTEVSNSKKLDR 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,833
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)