Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H06
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   7.8  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   7.8  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    25   7.8  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 16   EFFCLXSHKTQQHIVNLRXXLIFKVNQCSVXK 111
            +FF L  +K  +HIVN    L+  +  C   K
Sbjct: 1276 QFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIK 1307


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 479 KNHFQFNKVRSNNSTKVL*HPRFVPILTLVSIPPDL 372
           +  F  +KVR++NSTK      F+ +++++S  P+L
Sbjct: 257 RRSFSKSKVRNSNSTK---RRNFISLISMISPRPNL 289


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 302 VRKRNAVVGSYNIVVFSTVRTASLIFANTDTKPRL 198
           +R++N   G +NI+   +VR    +F++  T P+L
Sbjct: 182 LREQNVQYGFFNILADDSVRQGLKVFSDWPTFPQL 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,962
Number of Sequences: 5004
Number of extensions: 39226
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)