Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H05
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...   140   1e-34
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   8.9  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  140 bits (340), Expect = 1e-34
 Identities = 74/128 (57%), Positives = 87/128 (67%)
 Frame = -3

Query: 387 RLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPRSGLA 208
           +LSE A  P +GS  +AG DL +A +  VP RGK LV TDL I +P G YGRVAPRSGLA
Sbjct: 7   KLSEKATIPTKGSANSAGYDLYAAAECIVPRRGKVLVDTDLAIAVPEGTYGRVAPRSGLA 66

Query: 207 LKNFIDVGAGVIDEDYRGNVGVVLFXHSDTDFSVKKGDRIAQLICEKXDEPV*QEVANLA 28
            K+ ID GAGVID DYRG+V V+LF +SD DF +K GDRIAQLI E+   P    V +L 
Sbjct: 67  SKHSIDTGAGVIDADYRGHVRVLLFNYSDVDFPIKVGDRIAQLILERIVNPPVILVESLE 126

Query: 27  GTQRGDGG 4
            T RG  G
Sbjct: 127 ATVRGANG 134


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 12 HPFAFQPNSQLPVT 53
          +PF+F P+S+LPVT
Sbjct: 2  YPFSFDPSSKLPVT 15


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 587 LSNITYYRFCFDFKCLHXHNLI*DYHK 507
           L  +T    CFDF+  H HN +  + K
Sbjct: 129 LERMTLELICFDFRVRHPHNYMVKFAK 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,486
Number of Sequences: 5004
Number of extensions: 44813
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)