Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_H02
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 199 4e-52
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 134 2e-32
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 80 5e-16
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 59 9e-10
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 29 1.1
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 2.6
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 26 7.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 7.9
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 7.9
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 199 bits (486), Expect = 4e-52
Identities = 90/102 (88%), Positives = 96/102 (94%)
Frame = -1
Query: 858 WRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAA 679
WRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+LL+FANKQDLPNAMNAA
Sbjct: 78 WRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAA 137
Query: 678 EITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 553
EITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 138 EITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 134 bits (324), Expect = 2e-32
Identities = 61/101 (60%), Positives = 76/101 (75%)
Frame = -1
Query: 858 WRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAA 679
WRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+ ANKQDLP A++ A
Sbjct: 82 WRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPA 141
Query: 678 EITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 556
+ITD L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 142 QITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 79.8 bits (188), Expect = 5e-16
Identities = 35/101 (34%), Positives = 63/101 (62%)
Frame = -1
Query: 858 WRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAA 679
W++YF++T+ +I+VVDS D R+ E R L +L E++L +L+ ANK D+ A+++
Sbjct: 77 WKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSE 136
Query: 678 EITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 556
EI+ L + ++ +W I + A +G + + + WL+N LK
Sbjct: 137 EISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 58.8 bits (136), Expect = 9e-10
Identities = 27/69 (39%), Positives = 41/69 (59%)
Frame = -1
Query: 858 WRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAA 679
WR YF G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++
Sbjct: 81 WRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISED 140
Query: 678 EITDKLGLH 652
E+ LGL+
Sbjct: 141 ELKAALGLY 149
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 28.7 bits (61), Expect = 1.1
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Frame = -1
Query: 813 DSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQ------DLPNAMNAAEITDKLGL- 655
D ND + + R+ +++L + VL + KQ +L +A N E+ + L
Sbjct: 46 DENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQNFLEMQEANSLD 105
Query: 654 HSLRNRNWYIQATCATSGDGLYEG--LDWLSNQLKN-ANR*PYVRQLADKS 511
+S+R N ++ AT D Y+ L ++N++ A P++ Q+ K+
Sbjct: 106 NSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFINQILRKT 156
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 348 LKYCFSKYYINYVYLNAINGMQINSVQ 268
L YC Y+INY+ ++IN ++ +Q
Sbjct: 33 LSYCCVSYFINYLDRSSINNAYLSGMQ 59
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 858 WRHYFQNTQGLIFVVDSNDRER--IGEAREELMRMLSEDELRDAVL 727
W + F+N +IF V ND ++ A E R++ L D+++
Sbjct: 209 WIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESISLFDSII 254
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -1
Query: 804 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 637
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 636 N 634
N
Sbjct: 465 N 465
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 584 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFGRSCLFA 718
P+ SP PEV+H W+ L P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,324
Number of Sequences: 5004
Number of extensions: 74167
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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