Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G24
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...   172   4e-44
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    29   0.53 
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    29   0.93 
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   1.6  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    27   3.8  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.6  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    26   6.6  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   8.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.7  

>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score =  172 bits (419), Expect = 4e-44
 Identities = 77/175 (44%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
 Frame = -2

Query: 614 KFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLEIMV 435
           +F+ +E I G   +KSS+Q+GI+A+L++ YP+L   ID+++PKK     +KC D L  + 
Sbjct: 7   RFNSREDIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQLTQIKCEDRL-FLY 65

Query: 434 NSAGDLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAK 255
              G+++ F+H +GP +P+L+L+HK P      +VD+GAI+F+LSGANIM PGL S    
Sbjct: 66  TLNGEIILFQHFDGPIIPSLRLVHKCPDAFTQVRVDRGAIKFLLSGANIMIPGLVSKGGN 125

Query: 254 MSPS-DKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCHYLNDGLWQ 93
           +    +K Q V + AEGKE   AIG+T +S +++ + NKG+G+EN HYL D LW+
Sbjct: 126 LPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKEMKETNKGIGIENVHYLGDNLWK 180


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 399 RGSLDANLKTTAQISVLRSDAAS 331
           RGS+D+NLKT   + +LR D +S
Sbjct: 62  RGSIDSNLKTNYVLELLRKDVSS 84


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +3

Query: 618 KHIDVFVAQLTITKKHKTNKLLENHRLLSFPKQTK 722
           KH+ V++     T+KH+ N+++   ++LS P+++K
Sbjct: 88  KHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESK 122


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +3

Query: 498 LVNVVVQMRVQFQKASPYALLDRGLELLHARYAFLFIK-LFKHIDVFV---AQLTITKKH 665
           +V  + + +++     P     +G  L+   Y  LF+K L    +V +   A+  I  KH
Sbjct: 89  IVESIDRFKIKKVVVDPLIATRKGALLVMPDYLELFVKELIPRAEVLIPNIAEALIILKH 148

Query: 666 KTNKLLENHRL 698
            TN+ +E H L
Sbjct: 149 MTNEFVEIHHL 159


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 520 IWTTTLTRSYPRRIRLGLSNVTITS 446
           +W T L++  P+R  LG+ ++TI S
Sbjct: 333 MWATYLSQCLPKRAALGILSLTIVS 357


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 349 SFRCSKSIKVQFASCSAARTSCV 281
           +FR +K+  +QF S S+  TSC+
Sbjct: 6   NFRATKNFYLQFVSVSSRDTSCI 28


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = -2

Query: 617  KKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVK 462
            +K + K ++  ++   ++++  IRA+LL    + D ++ Q +  +   R+VK
Sbjct: 1126 QKNESKAALEQMKNYVTNIENNIRAKLLPSAANDDAWLSQNVVDESVTRVVK 1177


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/76 (22%), Positives = 27/76 (35%)
 Frame = -2

Query: 362 KYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIG 183
           K  FF+  Q +       +L   +I+C     A+         QV+  +     H   +G
Sbjct: 204 KRVFFMTPQTLQNDLKEHLLDAKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFRVLG 263

Query: 182 ITTLSTEDIAKVNKGV 135
           +T       A V K V
Sbjct: 264 LTATPGSSTASVQKVV 279


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 518 LDNYIDQILPKKDT--FRIVKCHDHLEIMVNSAGDLLFFRHREGPWMPTLKLL 366
           LD YID ++P+  T   R +K +  + ++ ++AG    + H +       KL+
Sbjct: 194 LDEYIDLVIPRGSTNLVRHIKDNTKIPVLGHAAGLCSMYVHEDADMELASKLV 246


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 606  IKLFKHIDVFVAQLTITKKHKTNKLLENHRLLSFPKQTKTANHR 737
            IK+ K  ++ V Q   T++    K ++N+R+    ++    N+R
Sbjct: 919  IKIMKRANLIVDQSLDTQRRVWKKYVQNYRIQKLTEEISYKNYR 962


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,857
Number of Sequences: 5004
Number of extensions: 60097
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)