Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_G24
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0032 - 11795368-11795385,11795607-11795670,11795979-117960... 159 2e-39
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 48 6e-06
05_03_0095 - 8349971-8350171,8350659-8351303 30 1.7
06_03_0369 + 19975703-19975931,19976197-19976239,19976799-199768... 30 2.2
05_01_0474 - 3797926-3798609 30 2.2
10_06_0005 + 9459181-9459409,9459672-9459714,9460274-9460360,946... 29 3.0
03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319 29 3.0
04_03_0811 - 19909128-19912214 28 6.9
04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911 28 6.9
11_06_0729 - 26721730-26722797 28 9.1
08_01_1078 + 11045555-11045673,11045940-11045991,11046230-110462... 28 9.1
>01_03_0032 -
11795368-11795385,11795607-11795670,11795979-11796046,
11796319-11796455,11796722-11796783,11796889-11796956,
11797045-11797126,11798160-11798269
Length = 202
Score = 159 bits (386), Expect = 2e-39
Identities = 85/176 (48%), Positives = 117/176 (66%), Gaps = 2/176 (1%)
Frame = -2
Query: 599 ESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLE-IMVNSAG 423
E IS Q+K+SVQ+ IR + + YP L+ +D +LPKK +VKC +HL ++VN+
Sbjct: 41 EDISAQNQVKASVQRKIRQSIADEYPGLEPLLDDLLPKKSPMIVVKCQNHLNLVVVNNVP 100
Query: 422 DLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPS 243
LFF R+ P ++ K+ QVD+GAI+FVLSGANIMCPGLTS +
Sbjct: 101 --LFFNIRDDP-----DIMKKF-------QVDRGAIKFVLSGANIMCPGLTSPGGSLDVE 146
Query: 242 DKGQV-VAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCHYLNDGLWQMKAVK 78
+ + VAIMAEGK+HALAIG T +S +DI +NKG+GV+N HYLNDGLW+M+ ++
Sbjct: 147 VEEETPVAIMAEGKQHALAIGYTKMSAKDIKTINKGIGVDNMHYLNDGLWKMERLE 202
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 48.4 bits (110), Expect = 6e-06
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 14/191 (7%)
Frame = -2
Query: 623 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHL-DNYIDQILPKKDTFRIVKCHDHL 447
MFKK + + +Q+L + +K +R E +P D +D ILP K + K + +
Sbjct: 1 MFKKHVD---VKALQRLSGADKKKLRRTAKERFPQASDADLDAILPPKVEVTVAKYPNRV 57
Query: 446 EIM-VNSAGDLLFFRHREGPWM-PT----------LKLLHKYPFFVPMQQVDKGAI-RFV 306
+ + +LF G + PT + L K P +P + G + RF+
Sbjct: 58 LVYGIEGEFPMLFDIDGRGHELFPTEHSLTGENIAVYALWKVPDLLPAFTLKGGEVSRFI 117
Query: 305 LSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVE 126
L GA++M PG++ + GQ ++ G +A+G TT+S+ + K G +
Sbjct: 118 LGGADLMFPGISIPPEGLPSFQPGQPWSVKVPGNPAPIAVGATTMSSNEALKA--GDSAD 175
Query: 125 NCHYLNDGLWQ 93
+ N+G ++
Sbjct: 176 GRYVPNEGFYE 186
>05_03_0095 - 8349971-8350171,8350659-8351303
Length = 281
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = -2
Query: 350 FVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTL 171
++P Q+D G +++ + + +TS+ + S Q + + A G A A+G L
Sbjct: 113 YIPAGQIDGGRTQYMATSFTVPAFAVTSSATAAASSSPAQTITVPASGPSPA-AVGAVAL 171
Query: 170 STE 162
E
Sbjct: 172 QQE 174
>06_03_0369 +
19975703-19975931,19976197-19976239,19976799-19976826,
19976977-19977114
Length = 145
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 210 LGHDGDDLTLVAWRHLRVGRRQPRTHDVRAAEHEANCTFIDLLH 341
L H G D+ L+ H +G+R+ R + AA H C +DLLH
Sbjct: 27 LSHPGTDVHLLKVAHDGIGQRRMRKEE--AATHGGGC--VDLLH 66
>05_01_0474 - 3797926-3798609
Length = 227
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 212 RP*WRRLDPCRLETSSRWPTSAPDT 286
RP WRR PC +SS W S+P +
Sbjct: 117 RP-WRRTSPCSTSSSSSWSYSSPSS 140
>10_06_0005 +
9459181-9459409,9459672-9459714,9460274-9460360,
9460669-9460810
Length = 166
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 210 LGHDGDDLTLVAWRHLRVGRRQPRTHDVRAAEHEANCTFIDLLH 341
L H G D+ L+ H +G+R R + AA H C +DLLH
Sbjct: 27 LSHPGTDVHLLKVAHDGIGQRHMRKEE--AATHGGGC--VDLLH 66
>03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319
Length = 317
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -2
Query: 392 PWMPTLKLLHKYPFFVPMQ---QVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVA 222
P +P L L+H + Q QV + RF + +++C G +S+++ PS+ Q A
Sbjct: 50 PRLPPLLLIHGFGPMATWQWRRQVGPFSRRFHIIVPDLLCFGASSSSSSPPPSESAQAAA 109
Query: 221 IM 216
++
Sbjct: 110 LL 111
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -2
Query: 608 DEKESISGVQQLKSSVQKGIRARLLELYPH---LDNYIDQILPKKDTFRIV 465
D+K ISG V G A LL + H L N ID ILPK I+
Sbjct: 303 DQKWHISGKCITNKEVSSGTTALLLSHFSHKPSLLNLIDNILPKLSCLSIL 353
>04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911
Length = 178
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = -2
Query: 356 PFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGIT 177
P +++V G+ +S + C G+++ + P + +VA++ HA+A G+T
Sbjct: 6 PATAAVRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKP--EADMVALI----HHAVAAGVT 59
Query: 176 TLSTEDI 156
L T DI
Sbjct: 60 LLDTADI 66
>11_06_0729 - 26721730-26722797
Length = 355
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 630 VFVAQLTI----TKKHKTNKLLENHRLLSFPKQTKTANHRPAE 746
V++ +LT+ T + + K LE+++ L FP T+ H+P E
Sbjct: 161 VYLTELTLRWGGTDERCSKKALESYKKLFFPPVTEIKQHQPPE 203
>08_01_1078 +
11045555-11045673,11045940-11045991,11046230-11046279,
11047286-11047439,11048266-11048391
Length = 166
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 552 ALLDRGLELLHARYAFLFIKL 614
AL+DRG E ++AR++ +F+KL
Sbjct: 50 ALVDRGSEFINARFSPVFLKL 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,647,636
Number of Sequences: 37544
Number of extensions: 412231
Number of successful extensions: 1057
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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