Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_G22
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335... 167 8e-42
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 32 0.68
05_03_0341 - 12700232-12700709,12702101-12702159,12703246-12703473 30 2.7
09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766... 29 4.8
05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-39... 29 4.8
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 29 6.3
02_03_0204 - 16369800-16371758,16372260-16372331 29 6.3
>07_01_0444 +
3357048-3357425,3357841-3357969,3358165-3358284,
3358661-3358753,3358935-3359014,3359180-3359293,
3359530-3359603,3359757-3359833,3360558-3360641,
3360732-3360824,3360901-3361008,3361130-3361204,
3361507-3361911
Length = 609
Score = 167 bits (407), Expect = 8e-42
Identities = 76/155 (49%), Positives = 106/155 (68%)
Frame = -2
Query: 851 CARAYILRSHVLVMTFMGEGGWPSPKLKDVEISQSTARSLYRDCITMMWKMYNICKLVHA 672
C + +LR HVLVM F+G+GGW +P+LKD +S R Y + IT M +Y CKLVH
Sbjct: 313 CPKPLLLRLHVLVMEFIGKGGWAAPRLKDAALSDDKLRESYFELITTMRTLYQKCKLVHG 372
Query: 671 DLSEYNLLYHKGNAVVIDVSQSVEHDHPHAFEFLRKDCTNISDFFRKRGVATLTVKELFD 492
DLSEYN+LY +G+ +IDVSQSV+ DHP A EFL++DC +++DFF+KRGVA ++V ELF+
Sbjct: 373 DLSEYNILYFEGHLYIIDVSQSVDLDHPSALEFLKEDCLHVTDFFKKRGVAVMSVTELFN 432
Query: 491 FITDSSINVNNLEECLEKLSDKAASRNFEDMTAQE 387
F+ D +I +++ LEK+ K DM A +
Sbjct: 433 FVIDQNIADEDVDHYLEKIQQKMLENG--DMVAND 465
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 31.9 bits (69), Expect = 0.68
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Frame = -2
Query: 632 AVVIDVSQSVEHDHPHAFEFLRKDCTNISDFFRKRGVATLTVKELFDFITDSSINVNNLE 453
A++I ++++ D E L + ++ + G +KEL D + SI+ NLE
Sbjct: 1394 AMMISETKAMLEDKSKVIEGLEHEILLLNS--SEEGRLMSQIKELNDNLKIISIDKGNLE 1451
Query: 452 ECLEKLSDK---AASRNFEDMTAQEQVEEEA-FKNIYIPKRLTEVINYERDISKAKKGDT 285
E + KL+DK A + E+ A + + A +Y ++ EV ER + + + T
Sbjct: 1452 EEILKLTDKLEMAVALAEENEAASIEARQAAEISKVYAEEKEEEVRILERSVEELE--ST 1509
Query: 284 EDLTYKKIAGFKEDL 240
+ +++ KE++
Sbjct: 1510 ITVLEEEVCNLKEEV 1524
>05_03_0341 - 12700232-12700709,12702101-12702159,12703246-12703473
Length = 254
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 503 ELFDFITDSSINVNNLEECLEKLSDKAASRNFEDMTAQEQVEEE 372
E+ T SS+ +EE + + + + ++D A+ Q EEE
Sbjct: 76 EVVQVSTSSSVTSKTIEEAFSAIPEDSRRKEYQDAVAKAQAEEE 119
>09_06_0071 -
20675501-20675830,20676120-20676286,20676472-20676619,
20676768-20677205,20677667-20677741,20678000-20678283,
20678940-20679159
Length = 553
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 409 KFREAALSDSFSRHSSKLFTFID 477
K R+ SDS +H+ KLFTF D
Sbjct: 244 KSRDTTYSDSLLQHAQKLFTFAD 266
>05_01_0055 -
390371-390457,390637-390715,390804-390856,390951-391105,
391216-391422,391518-391658,392044-392202,392296-392476,
393153-393252,393321-393470,393581-393705,394006-394096,
394364-394472,394558-394657,395143-395307,395401-395506,
395590-395894,396003-396241,397036-397114,397189-397327,
398004-398054,398316-398770,398961-399158,399199-399261,
400212-400436,400706-400988,401109-401170
Length = 1368
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 863 CTTXCARAYILRSHVLVMTFMGEGGWPSPKLKDVEISQSTARSLY 729
C T R ++ H +V++ GEGGW +D + S ST S Y
Sbjct: 669 CITISHRPALVAFHDIVLSLDGEGGWDVQHRRD-DSSFSTEESDY 712
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -2
Query: 563 DCTNISDFFRKRGVATLTVKELFDFITDS-SINVNNLEECLEKLSDKAAS-RNFEDMTAQ 390
+C+N DFF++ T +E ++ + NL++ L S+KA + +F + AQ
Sbjct: 348 ECSNAEDFFQQLNKLNATYEEFVKLGKEAIPLAEKNLKQLLADESEKAQTFDDFVSVLAQ 407
Query: 389 EQVEEEAFKNIYIP 348
+++++A + + P
Sbjct: 408 VKMDKDAVQVLLQP 421
>02_03_0204 - 16369800-16371758,16372260-16372331
Length = 676
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 557 TNISDFFRKRGVATLTVKELFDFITDSSINVNNLE 453
TNI+ F ++ T K+L D T S+N NLE
Sbjct: 57 TNIAGFLARKQKTTTEWKKLNDNFTSGSVNKENLE 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,757,362
Number of Sequences: 37544
Number of extensions: 321677
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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