Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G21
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   5.1  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   6.7  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   8.9  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.9  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 667 VSWLATXSCAQCEYFNVLDSVKVNSNLHG 753
           V+WLA+ + A  E F +LD +  N ++ G
Sbjct: 689 VAWLASFNKASDEIFLILDRMGFNEDIRG 717


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 210 SVIDSRTRQHNNPLAQRKGPPPPLEAQPVG 121
           ++I S + Q+N   AQ   PP P++  P G
Sbjct: 95  AIIGSNSGQYNWNQAQTAQPPQPVQPNPYG 124


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 659 HLVDLGNCNRQIVSCVHHADWFIVKLRNR 573
           +L+DL  C R+ V C++  +WF+  + N+
Sbjct: 278 NLIDL-ECIRRSVFCLYILEWFLALIFNK 305


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 97  PPTKWSLAANRLCFERWRWTFA 162
           PP+ +S   +    ERW WT A
Sbjct: 147 PPSDYSFGVHYKNVERWAWTLA 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,374
Number of Sequences: 5004
Number of extensions: 55211
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)