Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G21
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0202 + 5735613-5736170                                           31   1.3  
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63...    31   1.3  
05_05_0304 - 23965842-23965849,23965940-23966107,23966303-239665...    31   1.3  
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404...    30   2.3  
11_06_0594 + 25349612-25352530                                         29   5.3  
08_01_0787 - 7611224-7611268,7611555-7611696,7613703-7613923           28   9.3  
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20...    28   9.3  

>09_02_0202 + 5735613-5736170
          Length = 185

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 222 TSRHSVIDSRTRQHNNPLAQRKGPPPPLEAQPVG 121
           T RH++  +    H  P +    PPPP +AQPVG
Sbjct: 67  TKRHAMRANAAAYH--PSSPAAAPPPPAQAQPVG 98


>08_01_0087 +
           630355-630403,630502-630699,631858-631943,632238-632946,
           633029-633194,633459-633934,634023-634873,635078-635987,
           636597-636784
          Length = 1210

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 185 SITTXSPSAKVHRHRSKHSLLAASDHL-VGGRDRCATEPMP 66
           ++TT    AKV+R RS+H  L     L +  R R A + MP
Sbjct: 167 TLTTEQKQAKVNRQRSRHQSLTKEQRLDMNARRRVARQNMP 207


>05_05_0304 -
           23965842-23965849,23965940-23966107,23966303-23966575,
           23966676-23967039,23967762-23968133
          Length = 394

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/98 (23%), Positives = 45/98 (45%)
 Frame = -3

Query: 395 H*TDSGAAVTVSRRTAIQASVPLARLNPVYWRLETYAYVWYLRRQTSLDLPDVKHLPVPV 216
           H   +G    +S   A+Q  +PL + +P    + + AY  +L     L+    + L    
Sbjct: 252 HGISNGNLSALSTTDALQMELPLIQFDPNNQFVYSRAYAMHLTNFALLN-DQSEELLNDT 310

Query: 215 DILSSIAGRVSITTXSPSAKVHRHRSKHSLLAASDHLV 102
           D+L+ +  +  ++  S S  ++     H+ +AAS+ LV
Sbjct: 311 DVLNYVVMKEELSGGSLSPTINMPCEAHNSMAASNELV 348


>11_04_0467 +
           18039458-18039638,18040136-18040227,18040336-18040452,
           18041228-18041313,18041385-18041643,18041761-18041957,
           18042181-18042213,18043371-18043862,18044236-18044299,
           18045478-18045618,18045726-18045803,18047077-18047166,
           18047260-18047352,18047430-18047489,18047567-18047635,
           18047737-18047823,18048337-18048379,18048517-18048587,
           18049050-18049143,18050335-18050447,18050909-18050998,
           18051075-18051155,18052211-18052291,18052369-18052464,
           18052543-18052599,18052693-18052737,18052807-18052872,
           18052961-18052999
          Length = 1004

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -1

Query: 643 GTVTDKSYRVYIMRTGLLLS*EIVFMLFKCCFNFSTINYSTREISIFCNKIFITYL 476
           G +  +     + R GL+L        FKC  + S +  +T+++ + C +I+  Y+
Sbjct: 449 GALASQELNQGVYRAGLVLDMNSASHDFKCTPSTSLVGKATKDLLVLCQEIYKVYI 504


>11_06_0594 + 25349612-25352530
          Length = 972

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = -3

Query: 257 SLDLPDVKHLPVPVDILSSIAGRVSITTXSPSAKVHRHRSKHSLLAASDHLVGGRDRCAT 78
           SL   DV HLP  +D L  +      T      ++     KH +L    HL+ G   C +
Sbjct: 648 SLRNTDVSHLPKKIDKLQYLE-----TLDIRQTQIKAFPGKHFILPGLKHLLAGCTNCPS 702

Query: 77  EPMPLENKE 51
           +   L  KE
Sbjct: 703 KKNNLMEKE 711


>08_01_0787 - 7611224-7611268,7611555-7611696,7613703-7613923
          Length = 135

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 110 GHLQPTGCASSGGGGPLRWAXGLLC 184
           G     G    GGGG  RWA G +C
Sbjct: 7   GDAAAEGRRGEGGGGAARWAVGAVC 31


>01_01_0027 -
           205450-206029,206706-207276,207408-207836,208438-208525
          Length = 555

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -3

Query: 251 DLPDVKHLPVPVDILSSIAGRVSITTXSPSAKVHRHRSKHSLLAASDHLVGGRDRCATEP 72
           +LPDV  +   VD++ +    V       S  VH+ +      AAS+ L  G    AT P
Sbjct: 487 ELPDVGVIQKVVDLVYACTQHVPSVRPRMSHVVHQLQQLELKSAASEQL-SGTSTSATSP 545

Query: 71  M-PLE 60
           M PLE
Sbjct: 546 MLPLE 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,349,082
Number of Sequences: 37544
Number of extensions: 398113
Number of successful extensions: 1324
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)