Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G18
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.30 
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   6.5  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   8.5  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   8.5  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.5  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   8.5  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   8.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   8.5  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = -1

Query: 480  AIDYSTYFKVDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGDCSNIVTEDIIKYR 304
            A++YS + ++      +   D +D+++ + E+L+S       KN + SN++   IIKYR
Sbjct: 1240 AVNYSLHSQLCEKFNVQESLDSIDDLIEKFEKLSS-----SEKNDNLSNLIERQIIKYR 1293


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 192 FGVQNDNKLKXLLKPFIKRGRETIPDNSLPPXHKXDLXSVMDNFQS 55
           F   ND      LK  ++  R T+P+ S P  H  DL  ++++ +S
Sbjct: 224 FPQMNDWDKVVALKTLVRYARLTLPEPSTPSTHS-DLKELLESIKS 268


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 896 CYFCXKSCSSVNDGQYVFNTTHYR 825
           CY C  SC + +D   +FN  H+R
Sbjct: 63  CYSCSISCHADHDLVDLFNKRHFR 86


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 355 KERRLLQYCD*RYNKIS*RDKCAREKDFDP 266
           + +R +QYC  RYN++  RD   +  D DP
Sbjct: 173 QNQRQIQYCIQRYNELV-RDLIGKACDLDP 201


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
 Frame = -1

Query: 510 WRRLN-MLEDIAIDYSTYFKVDVLEGFKTVQDVVDN--MLTRLEELTSVL----QMVKLK 352
           W  ++ +L D +++     + D    +KT    + N   L R    +S++    ++  L+
Sbjct: 165 WNNVDTLLRDGSLENVNNSRQDQFLPYKTFSSTISNSDFLHRESSFSSLIDEESKLASLR 224

Query: 351 NGDCSNIVTEDIIKYRREINVLGKRISTLSNVLMFLSNNVDTVEKQVERAEGFFGVQNDN 172
           N + ++     ++K   E N+L +++  LSN   F  NNV         +  F  +Q+D+
Sbjct: 225 NLNINDRPPLPVLK-NSERNLLHRQL--LSNHPFFSQNNVSLSTNSKNYSTDFTKIQSDS 281

Query: 171 KL 166
            L
Sbjct: 282 SL 283


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 683 FVGSKKKLLYYILIVPIMEL-FIKVYNSTCPTPLRDLTKIVNTWIDKFVS 537
           ++ S  + L+ I    I EL     YNS C TP  DL   +    D  VS
Sbjct: 310 YLASTMQSLFSIKEFAIHELNLFNTYNSVCQTPTTDLQCQLGKLADGLVS 359


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 479 AISSNMFNRLQNLDTNIQISLQ 544
           ++SSN++  L NLD N  +S Q
Sbjct: 197 SVSSNVYQHLLNLDMNFHLSKQ 218


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 22/109 (20%), Positives = 49/109 (44%)
 Frame = -1

Query: 447  VLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGDCSNIVTEDIIKYRREINVLGKRIST 268
            ++EG   +  + D  ++   E+ S   +   K+  CSN+   +    +R   V  + +++
Sbjct: 729  IVEGISFLLFLNDTGVSDFHEIVSSTSIDIQKS--CSNMTFGEFFTSKRGREVTKELVNS 786

Query: 267  LSNVLMFLSNNVDTVEKQVERAEGFFGVQNDNKLKXLLKPFIKRGRETI 121
            L N  +    N+D V + + +  G F    D+ L       +K+ ++T+
Sbjct: 787  LVNRHLQSGGNIDMVSQLLRKKCGSF-CSADDVLIFKAVESLKKAKDTV 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,588,703
Number of Sequences: 5004
Number of extensions: 76191
Number of successful extensions: 223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)