Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G18
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168...    31   1.7  
07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468...    30   2.9  
09_03_0056 - 11936264-11939677                                         29   6.8  
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906...    29   6.8  
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273...    28   9.0  
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    28   9.0  

>04_04_1617 -
           34815889-34816080,34816185-34816412,34816591-34816851,
           34816943-34817299,34817466-34817579,34817653-34817726,
           34817839-34818022,34818349-34818494,34818628-34818986,
           34819912-34820132
          Length = 711

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 608 NSTCPTPLRDLTKIVNTWIDKFVSLFEYLYPD 513
           N  C  P  D+   V+ WID+    FE+L PD
Sbjct: 141 NFVCDYPEGDIRLSVDDWIDRDYDYFEFLTPD 172


>07_01_0627 +
           4685077-4685155,4685978-4686336,4686761-4686862,
           4687528-4687598,4687871-4687989,4688327-4688422,
           4688527-4688636,4688734-4688814,4689124-4689224,
           4689663-4689771,4689971-4690076,4690140-4690225,
           4690324-4690449,4690816-4690902
          Length = 543

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = -1

Query: 519 SRFWRRLNMLEDIAIDYSTYFKVDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGD 343
           S FWR    + + ++     +K D+    + + D+V+ M +R+ ++  VL    L +G+
Sbjct: 402 SNFWRIREGISEASVKVGAVYKYDLSIPVEKLYDIVEEMRSRVGDMGQVLGYGHLGDGN 460


>09_03_0056 - 11936264-11939677
          Length = 1137

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 635  IMELFIKVYNSTC----PTPLRDLTKIVNTWIDKFVSLFEYLYPD 513
            I  LFI V  S+     P   R LTK+  TW  K +SL   L P+
Sbjct: 945  IASLFITVTGSSSRGSSPVVFRSLTKLSVTWCRKLMSLDNLLQPE 989


>02_03_0313 -
           17590109-17590148,17590254-17590382,17590479-17590612,
           17590779-17590841,17590920-17591070,17593372-17593424,
           17593483-17593629,17593839-17594163,17594240-17594409,
           17595252-17595453,17596065-17596273,17597051-17597260,
           17597360-17597489,17599664-17600402,17600411-17600531
          Length = 940

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 243 SNNVDTVEKQVERAEGFFGVQNDNKLKXLLKPFIKRGRETIP 118
           ++ ++ +  +   AE FF  Q  NKL    + F+K G+E IP
Sbjct: 339 ADRMNKISLECSNAEDFF--QQLNKLNATYEEFVKLGKEAIP 378


>04_04_1619 -
           34825922-34825998,34826109-34826200,34827281-34827399,
           34827507-34827734,34827904-34828164,34828258-34828614,
           34828803-34828916,34828990-34829063,34829176-34829359,
           34829685-34829830,34829951-34830309,34835569-34835789
          Length = 743

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 608 NSTCPTPLRDLTKIVNTWIDKFVSLFEYLYPD 513
           N  C  P  D+   ++ WI++    FE+L PD
Sbjct: 141 NFVCDYPEGDIRLSIDDWINRDYDYFEFLAPD 172


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
 Frame = -1

Query: 447 VLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGDCSNI-VTEDIIKYRREINVLGKRIS 271
           ++EG +  + +++ +L R++      Q ++L NGDCS + + E ++K   +I    +RI 
Sbjct: 523 LVEGNELPRLLLETIL-RMKPTDEEEQKLRLYNGDCSQLGLAEQVMKALIDIPFAFERIR 581

Query: 270 TLSNVLMFLSNNVDTVEKQVERAEGFFGVQNDNKLKXLLKPFIKRG 133
            L   +  L  +  ++ +   + E   G         LL+  +K G
Sbjct: 582 ALL-FMSSLQEDASSLRESFLQLEAACGELKHRLFLKLLEAILKTG 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,041,480
Number of Sequences: 37544
Number of extensions: 409924
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)