Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_G18
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83216-11|CAB05679.2| 404|Caenorhabditis elegans Hypothetical p... 31 1.5
AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical ... 30 2.0
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 30 2.0
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 30 2.0
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical ... 29 3.5
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 29 6.1
U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily as... 29 6.1
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 29 6.1
Z49913-2|CAA90143.1| 660|Caenorhabditis elegans Hypothetical pr... 28 8.1
>Z83216-11|CAB05679.2| 404|Caenorhabditis elegans Hypothetical
protein C08F11.13 protein.
Length = 404
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 561 IYNFCKVS*WCRTCRIIYFNK*FHNRHYKYVVQ*FFFRSYKLVTCE--SYVPIYQFLAIK 734
I FC ++ C +I+YF+K N ++ ++ ++ + L+ C S +P+Y +
Sbjct: 300 ILTFCVLTVICLFSKIVYFHKSPKNVETRFFMKKWYL-WFLLINCVIWSSIPLYVIGKVG 358
Query: 735 NQIYTAHDIITTKITF 782
N +++ + + +TF
Sbjct: 359 NVVFSPNSLFWALLTF 374
>AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical
protein H06I04.3b protein.
Length = 716
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -1
Query: 327 TEDIIKYRREINVLGKRISTLSNVLMFLSNNVDTVEKQVERAEG 196
TE++I+Y ++ VLG R L +L + + ++T+E+Q + EG
Sbjct: 292 TEEVIEYMNDVKVLGPR--ELRVLLRWRKSMLETLEEQRKAVEG 333
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -1
Query: 327 TEDIIKYRREINVLGKRISTLSNVLMFLSNNVDTVEKQVERAEG 196
TE++I+Y ++ VLG R L +L + + ++T+E+Q + EG
Sbjct: 292 TEEVIEYMNDVKVLGPR--ELRVLLRWRKSMLETLEEQRKAVEG 333
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -1
Query: 327 TEDIIKYRREINVLGKRISTLSNVLMFLSNNVDTVEKQVERAEG 196
TE++I+Y ++ VLG R L +L + + ++T+E+Q + EG
Sbjct: 292 TEEVIEYMNDVKVLGPR--ELRVLLRWRKSMLETLEEQRKAVEG 333
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = -1
Query: 432 KTVQDVVDNMLTRLEELTSVLQMVKLK-NGDCSNIVTEDIIKYRREINVLGKRI-STLSN 259
K + DV+D M+T ++ + + M K+ + N+VT DIIK +R I + K + + +SN
Sbjct: 672 KNLGDVIDMMIT-IDRIKEQVDMDKIMIHKHMENVVTMDIIKDKRIIMEVKKDMENIISN 730
Query: 258 VLMFLSNNVDTVEKQVERAE 199
+ DT+ K + + E
Sbjct: 731 TTV-----KDTINKDMGKME 745
>AF077536-1|AAK31411.2| 643|Caenorhabditis elegans Hypothetical
protein C16A11.5 protein.
Length = 643
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = -1
Query: 450 DVLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGDCSNIVTEDIIKYRREINVLGKRIS 271
DV + KT Q+ + M ++ EL L + ++N + +D+ + E+N+L
Sbjct: 449 DVKKELKTSQNKENKMRKKVSELEKKLDVENVQNEQEVKEMEDDLRGKQEELNILRNDSL 508
Query: 270 TLSNVLMFLSNNVDTVEKQVERAEG 196
+ +VLM +++ K + EG
Sbjct: 509 KVHDVLMEIADLKQKHSKLEKHVEG 533
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 256 YIGQGRNPFP*HIYLSTIFYYIFSHN-IGAIAVL*FNHLKNTRQ 384
Y+ NPF +YLS +FY+I +N + + F H + +Q
Sbjct: 1128 YLVMQDNPFLPRLYLSGVFYFILMYNGSNVLPIARFLHYTHMKQ 1171
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 256 YIGQGRNPFP*HIYLSTIFYYIFSHN-IGAIAVL*FNHLKNTRQ 384
Y+ NPF +YLS +FY+I +N + + F H + +Q
Sbjct: 1128 YLVMQDNPFLPRLYLSGVFYFILMYNGSNVLPIARFLHYTHMKQ 1171
>U40029-12|AAA81131.1| 785|Caenorhabditis elegans Temporarily
assigned gene nameprotein 151 protein.
Length = 785
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 453 VDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGDCSNIVTED 319
V VLE +K +++V L E SVL MV K+ C+ +T D
Sbjct: 540 VAVLEAYKDAKNLVLFQLLPHEHKMSVLNMVLKKHPSCTIPITSD 584
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 256 YIGQGRNPFP*HIYLSTIFYYIFSHN-IGAIAVL*FNHLKNTRQ 384
Y+ NPF +YLS +FY+I +N + + F H + +Q
Sbjct: 1128 YLVMQDNPFLPRLYLSGVFYFILMYNGSNVLPIARFLHYTHMKQ 1171
>Z49913-2|CAA90143.1| 660|Caenorhabditis elegans Hypothetical
protein ZK938.3 protein.
Length = 660
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 161 LFNLLSFCTPKKPSALSTCFSTVSTLFDKNIN 256
LFN LS P S +S F T+S+LF +++
Sbjct: 12 LFNFLSTFNPSTISIISKFFETISSLFSGSLH 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,579,894
Number of Sequences: 27780
Number of extensions: 417896
Number of successful extensions: 953
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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