Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_G17
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 42 1e-04
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 31 0.18
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 31 0.24
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.32
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 0.97
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 28 1.3
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 27 2.2
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 2.2
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 27 3.0
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.0
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 27 3.9
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 5.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.2
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 5.2
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 6.8
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 6.8
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 9.0
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 9.0
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 25 9.0
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 9.0
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 25 9.0
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 41.5 bits (93), Expect = 1e-04
Identities = 34/130 (26%), Positives = 67/130 (51%)
Frame = -1
Query: 713 LRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTG 534
L K QE E K E ++ E+ +K+Q+ + ++ +E+QKQ+ R K LKK EA
Sbjct: 629 LEAKRQE--EARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKK-QQQEADRE 685
Query: 533 KHPPXIQVASKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLP 354
K ++ + E+R+ ++KL + + E+ ++ LEK +E+ + ++A++
Sbjct: 686 KMAREQRLREEEEKRI-LEERKRREKLDKEEEERRRRELLEKESEEKERRL---REAKIA 741
Query: 353 KWFGERPGKK 324
+F K+
Sbjct: 742 AFFAPNQTKE 751
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 696 GTLGVHRQTRDREIRSRREAKETGLRLKRAQRKTKAATEAQSSQE 562
GTLG +Q +RE +S R+ K L K A+R+ + E + ++
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEK 126
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 30.7 bits (66), Expect = 0.24
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Frame = -1
Query: 734 EGLSVDKLRQKAQELWECIVKLET-EKYDLEERQKRQDYDLK-ELKERQKQQLRHKALKK 561
E LS+ +L K Q+++E K+ E+ E R K+ + LK E + +K++ K+++K
Sbjct: 45 EQLSMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMRK 104
Query: 560 GLDPEALTGKHPPXIQVASKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQF 381
++PP + S Y EG E+ ++ ++W E E+F
Sbjct: 105 CQIDLMYIKEYPPLTKYVSLYA---------------EGTSEQ-TEETRNRIWAEMEERF 148
Query: 380 GGRQKARLP 354
+K ++P
Sbjct: 149 NSGRKHKIP 157
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.3 bits (65), Expect = 0.32
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = -1
Query: 707 QKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLD 552
++AQE++ ++ L E D+E+ Q Q + L+E ++++LRH L+K LD
Sbjct: 906 KRAQEMYANVL-LGVE--DMEDDQFSQRCERMALREAERRKLRHGKLQKHLD 954
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 28.7 bits (61), Expect = 0.97
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 359 VAPFACRRTVRPSLATPSRGSPCSVSLGHPRTVSFC 466
V+PF R + P A P R P + +GH V++C
Sbjct: 1236 VSPFK-ERLLSPIFAKPLRALPFHIQIGHIDAVNYC 1270
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = -1
Query: 674 KLETEKYDLEERQKRQDYDLKELKERQK-QQLRHKAL 567
KLE E+ L+E+Q+R++ ++L+E+++ Q+LR + +
Sbjct: 129 KLEKERIRLQEQQRRKEERDQKLREKEEAQRLRQEQI 165
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Frame = -1
Query: 674 KLETEKYDL---EERQKRQDYDLKELKERQKQQLRHKALKKG------LDPEALTGKHPP 522
KLETEK + EE+++++ D K+ KE K + K ++ LTG+ PP
Sbjct: 173 KLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPP 232
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -1
Query: 671 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPP 522
LE ++YD+EE D DL+EL ++ + + ++ ++ +A G+ P
Sbjct: 84 LELDRYDIEELD--DDNDLEELDIGARRAVDARLRRRDIELDAAAGRTKP 131
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 3.0
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = -1
Query: 671 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPXIQVASKYER 492
L+ + D+E+ + EL E +Q RH+ L K + K I+ A++ ER
Sbjct: 371 LDVTEIDVEQAFPLLNVPDAELDEAGLRQKRHQRLMKANYDARVRAKAEKAIEEAAEAER 430
Query: 491 -RVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQF 381
D R + + + + +K LEK+ + + +F
Sbjct: 431 AEADERLRLENFSTWVNEKRETHKILLEKISKNKRLKF 468
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 392 PSLATPSRGSPCSVSLGHPRTVSFCRRRIVCRHASR 499
PS+++ S S+SL + +SFC+ + CR+ R
Sbjct: 328 PSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQR 363
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -1
Query: 710 RQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGK 531
++K++++ E + K E +L+ + LKE ++QK+ L+ K + D L+ K
Sbjct: 19 KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEAD---LSQK 75
Query: 530 HPPXIQVASKYERRVDTRSYDD 465
H Q K + + +D
Sbjct: 76 HATERQKLDKGDEETNETQQED 97
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 717 QTPTEGPGTLGVHRQTRDREIRSRREAK 634
++ T+G GT V + TR + RSRR+ +
Sbjct: 203 ESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 380 RTVRPSLATPSRGSPCSVSLGHPRTVSFCRRR 475
R + P P R P ++ +GH +++C R
Sbjct: 1294 RLLSPIFGKPLRALPFTIQIGHIDAITYCLHR 1325
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/105 (20%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Frame = -1
Query: 719 DKLRQKAQELWECIVKLETEKYDLEE----RQKRQDYDLKELKERQKQQLRHKALKKGLD 552
+K+ +K ++ + I K E +D E+ + KR+ L++ ++++K +L + K
Sbjct: 64 EKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMKREKEILRQQRQKRKSELTQLSQKVKEK 123
Query: 551 PEALTGKHPPXIQVASKYERRVDTRSYDD---KKKLFEGDLEKLN 426
+ + K I + E D ++ D+ ++K +G+L++ N
Sbjct: 124 FKKMRKKPARRIVTIANDEEEEDDQTMDEDAFERKSMQGELKERN 168
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 656 YDLEERQKRQDYDLKELKERQKQQLRHKALKK 561
Y+ E+R KRQ+ E + R+K++ R A +K
Sbjct: 242 YEREQRAKRQEQFRLERENREKEKRRIAAQRK 273
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 686 ECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 588
E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 391 EAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 614 KELKERQKQQLRHKALKKGLDPEALTG 534
KE+K+RQ+ Q K +++GL +G
Sbjct: 461 KEIKDRQRTQKEEKVVQRGLTQVLTSG 487
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 476 SYDDKKKLFEGDLEKLNKDFLEK 408
S DKKK+ +EK++KD L K
Sbjct: 120 SLKDKKKMIVSGIEKVHKDKLSK 142
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 725 SVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH 576
S++ +R + EC ++ + +EER K D + + E QK++L H
Sbjct: 21 SLNPIRSSLIKQEECYKTVDGDDNPIEERIKACDAGI-QTSEEQKKELEH 69
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 708 TEGPGTLGVHRQTRDREIRSRREAKE---TGLRLKRAQRKTKAATEAQ 574
TEG L + + RS+R+A E L L+R + K KA EA+
Sbjct: 4 TEGKNDLRAKLAEKIQTFRSQRKATEKVDRALLLQRRKEKAKARAEAK 51
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 725 SVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKER 597
+V++L+ K +E + + K + EK D EE+ K++ KE+
Sbjct: 208 TVEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSKKEK 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,916
Number of Sequences: 5004
Number of extensions: 29895
Number of successful extensions: 169
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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