Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G15
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     30   0.34 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   5.6  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    26   5.6  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   5.6  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    26   7.4  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 749 DYYFLYHVNKTVRLHSQYSHEYPIYYYLLTYAGEWCVPESLNFFNSLGHCAEIPFVFGIK 570
           ++ +LYH  +T   H+   H   +YY   ++  +        F   L  C  IP VFG K
Sbjct: 659 EHTYLYHFGRTDHRHNFSLHHLNLYYE-SSFGAK--ASSLFAFLPQLSLCMLIPLVFGKK 715

Query: 569 -VPGKL 555
            +PG L
Sbjct: 716 NLPGTL 721


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 149 SFLTRSSKHGEQTRAFSFVNSAPNSTH*CFCCFTKSVLLFPYNSSTVL 6
           + ++RSSK  + T + SF N+ P +T       T      P  SS+VL
Sbjct: 343 TIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSVL 390


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 419 PVQSSEKLNYLSIGSELTKG 360
           P   S+KL+YLSI  E T+G
Sbjct: 362 PAYESDKLDYLSIDREYTEG 381


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/73 (27%), Positives = 26/73 (35%)
 Frame = +3

Query: 465 ISIFCKICPHFYDSTSCFNRITTSFAHCFIELSWYFNPKYKWYFSTMSK*IEKIQTFRNT 644
           +S+ C  C +FY+   CF        HC I   W      K Y   +   I  I   R T
Sbjct: 226 LSVECIFCTNFYEPVFCFE-------HCKIVHDWDIKKIQKDYSLDVYGAIRVINYSRKT 278

Query: 645 PFSSISK*IVIYW 683
              SI      +W
Sbjct: 279 KKKSIPAETDSFW 291


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 776 RAQYLQXISDYYFLYHVNKTVRLHSQYSHEYPIYYYL 666
           R Q +Q +   +     N++ ++  Q ++EYP YY L
Sbjct: 84  RRQVVQILDKSWSFLAPNESAKVIDQGNYEYPFYYEL 120


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 619 SIHLDIVLKYHLYLGLKYQESSMKQCAKEVVILL 518
           S+HL +  K H  +  +YQE +    +++++I+L
Sbjct: 370 SLHLSLYFKEHPIVHAQYQEINKLNNSEQIIIVL 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,522
Number of Sequences: 5004
Number of extensions: 78668
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)