Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G15
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006           31   0.83 
03_05_1042 - 29893649-29893721,29893960-29894033,29894111-298941...    29   5.9  
12_02_0266 - 16582912-16584918,16585041-16585229                       28   7.8  

>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
          Length = 585

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 539 KGSRDSIKTR---SRVVKMWTNFAKYGNPTPASDDPLLQI 429
           +G+  S ++R   S  +  W   A + +PTPAS +PLLQ+
Sbjct: 472 RGAESSPQSRGGSSSTLSSWGRTAAFSSPTPASMEPLLQV 511


>03_05_1042 -
           29893649-29893721,29893960-29894033,29894111-29894179,
           29894333-29894438,29894548-29894664,29895412-29895527,
           29895612-29895698,29897281-29897309,29897914-29898169
          Length = 308

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 457 GVGFPYFAKFVHIFTTLLLVLIESRLPLHTASLSFPGTLIPNTNGISAQCPSELKKFK 630
           G   P F +F +    +LLVL  S +P    S++ P T    +  ++A+  + L +F+
Sbjct: 83  GSSVPIFGEFENRVQAVLLVLGGSDMPPGLVSMAVPTTFDEKSTTVAARRVASLMRFR 140


>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -1

Query: 625 IFSIHLDIVLKYHLYLGLKYQESSMKQCAKEVVILLKQEVES*KCGQILQNMEILHQQAM 446
           + ++ LD++++           S+ + C++    L+++      CG I+Q  E LHQ   
Sbjct: 295 VHNLLLDLIVEKSTEENFVTVISTDQDCSRRGNFLIRRLNYRSNCGNIIQASESLHQVRS 354

Query: 445 IHYF 434
           I YF
Sbjct: 355 ITYF 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,444
Number of Sequences: 37544
Number of extensions: 429195
Number of successful extensions: 992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)