Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G14
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    29   0.93 
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    28   1.6  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   3.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.6  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.7  

>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 179 NVGKIIMYVYFTEMNFDYKQYQYAVQNIGCSCY 277
           N G +I +VY++E + D ++ + A+  +G S Y
Sbjct: 19  NTGNLIPHVYYSEYHADIEERRKALGRLGISLY 51


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 242 QYAVQNIGCSCYIFAHYIDATLKSIEIISTRRL 340
           ++ V  IGC C    HY + T  S EI + + L
Sbjct: 820 EHIVTQIGCFCLFATHYHEMTKLSEEITTVKNL 852


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 278 IFAHYIDATLKSIEIISTRRLCEY*HAIQRSSSYLIFNYTLISHCP 415
           + +H  D   KS + + T     Y HAI + S   ++   +I  CP
Sbjct: 819 LLSHVFDTNTKSFDTLKT---LNYKHAILKKSMGELYKMEMIHECP 861


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 620 LSVKGI*MWNSM*FVYLSEQTAFKSKVVSVSNSLAE 513
           +S+KG+  WNS+   Y +  T  + +V++   SL +
Sbjct: 528 ISLKGVNAWNSLETSYYNCMTVLEDEVIAQLKSLLQ 563


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 465 PVNLYFNVRIFV*TKLNGQCDINV*LNIKYELD-L*IACQYSH 340
           P+N+++   +   T  N +C ++   N  YE+D + IAC  SH
Sbjct: 791 PLNIHYEKFVSKVTIENDKCTLDCKDNSSYEVDQVVIACSPSH 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,395
Number of Sequences: 5004
Number of extensions: 56380
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)