Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G13
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.62 
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    27   3.3  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    27   3.3  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   5.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 335  EYYYNKYIIQILKTE*CEIYFCFQ 406
            EYYYNKY+ +  K+   EIY  F+
Sbjct: 1345 EYYYNKYLFETGKSSQEEIYLLFK 1368


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 325 WFSNLYNDYFILFYILMSHSLFSKT 251
           WF N+ N + ++ Y+L  HS+ S+T
Sbjct: 255 WFPNILNVFNLVKYVLSIHSVPSRT 279


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -1

Query: 328 KWFSNLYNDYFILFYILMSHSLFSK-----TKQYLIYSIKIVH 215
           K F N+Y+DY +L  I +S+ +F       T+Q+ +  I I H
Sbjct: 9   KLFWNVYSDYAVLIAISLSYFVFDVLMLPFTRQFSLEDITISH 51


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 376 CLQNLYYIFIVVVFIRKWFSNLYNDYFILFYILMSHSLFSKTKQY 242
           CL+NL    ++      WF++L ++Y  ++   +SH  FS    Y
Sbjct: 743 CLRNLLEKQLLSYNFTDWFASLGSEYENVYVKFISHYDFSSLNVY 787


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,029
Number of Sequences: 5004
Number of extensions: 54349
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)