Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G12
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1223 - 28526869-28527192,28527515-28527634,28527742-285278...    31   0.92 
03_03_0012 + 13737898-13740031,13740347-13740486                       29   3.7  
11_01_0782 + 6543906-6544702,6545717-6547850                           29   4.9  
07_03_1248 - 25165929-25166891,25169159-25169473                       29   4.9  
03_06_0747 - 35967119-35967185,35967325-35967422,35967533-359675...    29   6.5  
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186...    28   8.5  
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631...    28   8.5  

>06_03_1223 -
           28526869-28527192,28527515-28527634,28527742-28527816,
           28527905-28527964,28528271-28528370,28528664-28529148,
           28529243-28529437,28529532-28529762,28529851-28529967,
           28530247-28530330,28530755-28530893,28530939-28531090
          Length = 693

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = -2

Query: 838 REFK*IEGFDVSEAHQYEKKPNSNVGKGPNNKMTELETRQDELLNKLEILYERIKTISSQ 659
           RE++ I+     ++HQ +   N NV  G  NK++E      E++  +  ++ R+   SS+
Sbjct: 318 REYQIIDALSFDQSHQRKSSINGNVWNGNPNKLSE------EMVRCMRDIFLRLSDSSSE 371

Query: 658 CKLDNMSANIQSS 620
                 S N  SS
Sbjct: 372 ISPKGSSVNSISS 384


>03_03_0012 + 13737898-13740031,13740347-13740486
          Length = 757

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = -2

Query: 670 ISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWYLNIILKKSNIPI 506
           ISS CKL N  +++     S    +  P+ VV ++       Y  +++ K    +
Sbjct: 508 ISSNCKLQNWPSSLNDDGWSGTSFLFLPDHVVTIMRFHIATCYCELVMHKEGFSV 562


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = -2

Query: 430 KTSENPK--VNLRLIFKAA-ADSELKLSALSTPILGNVNILRYLSLAYPTIIPYDHNDHI 260
           K  E+PK  V LR + +   + S  KL+      L N+  L+YL L    +  +   D+ 
Sbjct: 758 KLLESPKFVVLLRGLQELCISSSATKLTTGLLSALSNLRKLKYLKLIADQLEEFIIKDNA 817

Query: 259 VDNLLDICHVLER 221
           + +LL +C VL R
Sbjct: 818 LPSLLSLCFVLNR 830


>07_03_1248 - 25165929-25166891,25169159-25169473
          Length = 425

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 20/86 (23%), Positives = 37/86 (43%)
 Frame = -2

Query: 721 QDELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWY 542
           +D LLNK  I   R++    Q +      N   SNA+        ++   +    SLP Y
Sbjct: 135 EDMLLNKKHIFVPRVEPTPHQIEETEDDYNDDGSNANVASPNSNYDQD--LFGSISLPHY 192

Query: 541 LNIILKKSNIPIHTTCHVHSSVPSEK 464
            +++L ++++ +H     H  +   K
Sbjct: 193 QDMLLNQNHLSVHRVEPAHDQLEKIK 218


>03_06_0747 -
           35967119-35967185,35967325-35967422,35967533-35967574,
           35967734-35967782,35967971-35968047,35968306-35968362,
           35968511-35968611,35968698-35969106
          Length = 299

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 763 GKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPE 584
           GKG   +   L   + E L  L+  Y   K I S  + DN+   +    +S V  +++P+
Sbjct: 82  GKGKKAEKRSLGEMEQEFLQALQAFYYDQKAIMSNEEFDNLKEELMWEGSSVV--MLSPD 139

Query: 583 E 581
           E
Sbjct: 140 E 140


>10_08_0015 +
           14116129-14116691,14116810-14117128,14117588-14118664,
           14118754-14119056
          Length = 753

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -2

Query: 775 NSNVGKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANI 629
           +S+V   PN+  TE+ET  D++L+  E  +E+++       +D+ S +I
Sbjct: 43  DSDVANEPNDGETEIETTVDDVLS--ESTHEQVENHGDGDNVDDSSVHI 89


>04_04_0168 +
           23259459-23260001,23260883-23262780,23263000-23263150,
           23263851-23264669
          Length = 1136

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 754 PNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSA-NIQSSNASKVESVIT 590
           P  +  +L    D    KLE+L+E +K     C LD M A  +Q + A ++ + I+
Sbjct: 139 PGKRRVDLYLEHDSQRYKLEVLFEDMKDCLG-CTLDGMGAILLQLNYAPRIHTAIS 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,751,489
Number of Sequences: 37544
Number of extensions: 341288
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)