Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_G10
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom... 101 8e-23
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 2.9
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch... 26 5.0
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 26 6.6
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 26 6.6
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 25 8.7
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 8.7
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.7
>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 101 bits (243), Expect = 8e-23
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 8/146 (5%)
Frame = -1
Query: 571 TLYIVKGMCILDYEGNRILAKYY--------DKDVLPTTKEQKAFEKNLFNKTHRANAEI 416
TLY V ILD G RI KYY + V + KE+K FEK LF KT + +I
Sbjct: 4 TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKTQNDI 63
Query: 415 IMLDGLTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLD 236
+ DG V + +D+ FY++G ENE++L L ++ +++ LL + ++R L+EN D
Sbjct: 64 LTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENYD 123
Query: 235 AVMLAFDEICDGGVILDAXPTXSVSR 158
+++ DE D GVIL+ P +R
Sbjct: 124 QLVIVVDETIDDGVILETEPALIAAR 149
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 2.9
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Frame = -1
Query: 562 IVKGMCILDYEGNRILAKYYDK-DVLPTTKEQKAFEKNLFNKTHRANAEIIMLDGLTCVY 386
+++ + I + G L+KYY D + + + + + + A + + VY
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 385 KSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEIC 206
+ L+F S +N+L + +++ E + N+ L+ N V DEI
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFF-GNVCELDLIFNFYKVSAILDEII 119
Query: 205 DGGVI 191
GG I
Sbjct: 120 LGGEI 124
>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 41 LQLCFFHFNQAHFSCSLXCLQSLGHCLLS 127
L+L FF FN + SL LQ+ G LLS
Sbjct: 164 LELSFFVFNDFNLFISLEDLQAYGDLLLS 192
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 595 MEGSLFEPTLYI-VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAN 425
M GS P Y V C ++E +L++ Y+K++ P+T E K EK F + N
Sbjct: 325 MGGSYHFPNFYKKVDEYCGTEWE--TMLSRLYNKELTPSTDENK-LEKLCFKASWALN 379
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +2
Query: 20 IFSLVSLLQLCFFHFNQAHFSCSLXCLQS-----LGHCLLSQGHVL 142
I S V+ LQ+C H+ SC QS L HCLL+ + L
Sbjct: 5 IGSAVAELQVCSTHYAMTIVSCGFHSPQSLMNADLQHCLLADQNYL 50
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = -1
Query: 403 GLTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVML 224
G VY+ LFF +NELI+ V++ E + N+ L+ N +
Sbjct: 55 GEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYF-GNVCELDLIFNFEKAYY 113
Query: 223 AFDEICDGGVILDAXPTXSVS 161
+E+ G + ++ T +S
Sbjct: 114 VMEELLLAGELQESSKTNVLS 134
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = -1
Query: 472 QKAFEKNLFNKTHRANAEIIMLDGLTCVYKS-------------NVDLFFYVMGSSHENE 332
Q F N+ K+H+ ++ L L V+K+ N +L F G +
Sbjct: 201 QDVFFTNMSMKSHKLGTSLLALHALNHVFKTRDRVLKNSARISQNPELEFRDQGYTRPKV 260
Query: 331 LILQSVLNALYESVSLLL 278
LIL N+ +E ++LL+
Sbjct: 261 LILLPTRNSAFEFINLLI 278
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 8.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 481 LWVGHLYRNIWPKFCFLH 534
LW+ H +++ P++ FLH
Sbjct: 308 LWIAHYWKDFHPRWPFLH 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,213
Number of Sequences: 5004
Number of extensions: 65274
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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