Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G10
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...   189   2e-48
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    43   2e-04
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    31   1.2  
U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score =  189 bits (461), Expect = 2e-48
 Identities = 85/167 (50%), Positives = 127/167 (76%), Gaps = 2/167 (1%)
 Frame = -1

Query: 571 TLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHR-ANAEIIMLDGLT 395
           +LY +KG+ ILD +GNR+LAKYYD+    T KEQKAFEK+LF+KT R  +A+I++LDG+T
Sbjct: 10  SLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVT 69

Query: 394 CVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFD 215
           C+Y+SNVDL+FYV+GS+ ENEL L + L  LY++VS++LR+N+E++ L++++D +ML  D
Sbjct: 70  CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129

Query: 214 EICDGGVILDAXPTXSVSRAALRTEDVPLGEQTVAQ-GLQAXKGATE 77
           EICD G+I++      V R AL++++V   +Q+V+Q G    K A E
Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDEVSFSDQSVSQIGFSFMKSANE 176


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
 Frame = -1

Query: 559 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAE-IIMLDGLTCVYK 383
           + G+ ILD +GN ++++ Y  DV  +  E+  F   L  K    +A  +++  G++  Y 
Sbjct: 3   ISGLFILDLKGNVVISRNYRGDVDMSCIEK--FMPLLVEKEDEGSASPVLVHQGISYTYI 60

Query: 382 SNVDLFFYVMGSSHENELILQSVLNALYESVSLLLR--RNMERRVLMENLDAVMLAFDEI 209
             ++++   +   + N ++   VL+ALY+ V +     + +E   + +N   +   FDE+
Sbjct: 61  KYMNVYLVTISKKNTNVIL---VLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEM 117

Query: 208 CDGG 197
            D G
Sbjct: 118 LDFG 121


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -3

Query: 131  PGRANSGPGIASXQGSN*NGPD*NEKNTTEAT 36
            PG + SGP IAS QGS+    + N  +TT AT
Sbjct: 943  PGSSTSGPTIASTQGSSSTQTNSNTGSTTVAT 974


>U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical
           protein D2096.3 protein.
          Length = 936

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +3

Query: 102 NPWATVCSPRGTSSVRSAARLTLXVGSASNITPPSQISSKASITAS--KFSIRTLRSMFL 275
           NP+    SP       + A L L +G+     PP     K S +    KF+  T+ S  +
Sbjct: 91  NPYGNNISPLNVKYSSNGATLLLTIGNDDRYVPPVNFPKKPSTSTESLKFTSGTIGSSDV 150

Query: 276 LSSKLT 293
            S K+T
Sbjct: 151 FSFKVT 156


>U55363-9|AAA97967.1|  184|Caenorhabditis elegans Hypothetical
           protein ZC404.1 protein.
          Length = 184

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -1

Query: 268 MERRVLMENLDAVMLAFDEICDGGVILDAXPTXSVSRAALRTEDVPLGEQTVAQ 107
           +ERR ++   D   L   E    GVI+   P  SV R  +RTEDV    +TVA+
Sbjct: 103 VERREVVTARDLARLMPPE---QGVIVVCNPERSVCRIKIRTEDVRKEVETVAK 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,525,640
Number of Sequences: 27780
Number of extensions: 377798
Number of successful extensions: 910
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)