Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G09
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    31   0.23 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    29   1.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   5.0  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    27   5.0  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
 Frame = +1

Query: 7   KQIAPSTIAKNQKNRTLSSFRINAFTQNLCLFISN--GXPHSSQCFQKIMQIALVSR-FL 177
           K+I  +T+  + K  T ++  ++  TQ+  L IS        S+ F K+  + L S  F 
Sbjct: 413 KKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSSYEHSEPF-KVSSVPLTSNNFS 471

Query: 178 CI-YTALHLLTI----YIYNPYTLTVKIQSKNPSAFTLSVPHEGTSL*KYVARFTLDLTY 342
            I +++   L I    Y+ N  TL   +QS   S FT+SVP   T      + FT  +T 
Sbjct: 472 SISHSSASSLPITPSSYLSNT-TLHSSVQSSQSSQFTVSVP-SSTQSYSTSSNFTTPITI 529

Query: 343 VTRNTSKPLY*VHIVYQNLCLNKN 414
            T  +S P   V   +Q   L+ N
Sbjct: 530 STSLSSFPTTIVSSSFQYSSLSSN 553


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 40  QKNRTLSSFRINAFT-QNLCLFISNGXPHSSQCFQKIMQIALVSRFLCIYTALHLLTI 210
           + ++   SFR++A   Q+L   I N   +  + F+K + + +   F+C+Y+ L++L I
Sbjct: 73  KSDKLSGSFRVSAIRRQSLYPIILNAFEYLIKEFKKDVFLKISDVFVCVYSNLNILYI 130


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +1

Query: 91  LCLFISNGXPHSSQCFQKIMQIALVSRFLCIYTALHLLTIYIYNPYTLTVKIQSK 255
           LCL+  N   HSSQ   ++ Q A    FL      H +  Y+       ++   K
Sbjct: 471 LCLYAQNLNSHSSQSLFELFQSASYPGFLISNDVNHKILKYVIGAINNAIQYAQK 525


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 109 NGXPHSSQCFQKIMQIALVSRFLCIYTALHL 201
           NG P S Q FQ+  Q+A V+  +     +H+
Sbjct: 102 NGDPPSQQLFQRYKQLARVTELIHAANIIHI 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,682,794
Number of Sequences: 5004
Number of extensions: 76386
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)