Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G09
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.7  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   2.3  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    24   2.3  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    24   2.3  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    24   2.3  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    24   2.3  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    24   2.3  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    24   2.3  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    24   2.3  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    24   2.3  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    24   2.3  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    24   2.3  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   3.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.0  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   9.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 513 SH-HATPHVMSEILDTT*HQTGWELAHST 430
           SH HATPH       T  HQ    LAHS+
Sbjct: 424 SHIHATPHHHHSHAATPHHQHSTPLAHSS 452


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNSLSNNYNYNNNYNN 100


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNSLSNNYNYNNNYNN 100


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNSLSNNYNYNNNYNN 100


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNSLSNNYNYNNNYNN 100


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNSLSNNYNYNNNYNN 100


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNSLSNNYNYNNNYNN 100


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNSLSNNYNYNNNYNN 100


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNSLSNNYNYNNNYNN 100


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNSLSNNYNYNNNYNN 100


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 315 ISNNNSLSNNYNYNNNYNN 333


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 315 ISNNNSLSNNYNYNNNYNN 333


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 VQNNNKTHENYPHIKDYNN 600
           + NNN    NY +  +YNN
Sbjct: 82  ISNNNPLSNNYNYNNNYNN 100


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 517 HKNHRRTFFVQNNNKTHENYPHIKDYNN 600
           H N+   +   NNN  + NY +  +YNN
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNN--NYNN 349


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 HSSQCFQKIMQIALVSRFLCIYT 189
           H S C ++ +Q+A + R L ++T
Sbjct: 39  HCSHCDRQFVQVANLRRHLRVHT 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,555
Number of Sequences: 438
Number of extensions: 5771
Number of successful extensions: 24
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)