Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_G08
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456... 30 1.3
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 29 3.0
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 28 3.9
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 28 5.2
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 27 6.8
03_03_0060 - 14157352-14158851 27 6.8
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 27 9.0
>01_07_0227 +
42144437-42144446,42145059-42145428,42145528-42145649,
42145767-42145935,42146236-42146545,42146742-42146825,
42147012-42147083,42147780-42147821,42147931-42148020,
42148106-42148213,42148292-42148384,42148540-42148619,
42148701-42148953,42151222-42151236
Length = 605
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 382 CYIREFDGVLPFDSVTYSKEAECTRYFCAH 293
C I+ + +L + SK A+C RYFC H
Sbjct: 182 CLIKMLEEILERAAEISSKLAQCDRYFCGH 211
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/69 (21%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = +2
Query: 2 IXKLSFQNYIIHEIYMIKNNIQAANIMKIKE-NILFLLMNRSH----YLKSLKFLPVYLV 166
+ +++ +N + ++ ++ +Q + +KE L+++ +R Y +SL+FLP+Y++
Sbjct: 772 LSRIAVENSLSDKLDSVRQQLQLKLVRSLKEYRNLYVVQHRIGGRLIYPESLRFLPLYIL 831
Query: 167 IFSRRLCLK 193
+ L L+
Sbjct: 832 SICKSLALR 840
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Frame = +2
Query: 50 IKNNIQAANIMKIKENILFLLMNRSHYLKSL----KFLPVY--LVIFSR-RLCLKNTDYV 208
I N++A ++ N LF+ M + + + F P Y V++S LC++N D +
Sbjct: 1043 IPKNLEAQRRLQFFTNSLFMDMPAAKPVSEMIPFSVFTPYYSETVLYSMSELCVENEDGI 1102
Query: 209 SIFFWLCK 232
SI F+L K
Sbjct: 1103 SILFYLQK 1110
>09_06_0317 - 22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 262 ELSSDTPVCTFTKPEENTHIICVL 191
+LSS+ VC F P + + IIC L
Sbjct: 960 DLSSEEEVCEFMVPADESQIICAL 983
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 517 K*ITRFVTNMSLKTLVFCVCVTLASAAIQRSALEPIPDKFNGL 389
K ++ F+T + ++FC A + A E +P +F GL
Sbjct: 423 KMVSPFLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGGL 465
>03_03_0060 - 14157352-14158851
Length = 499
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 382 CYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTP 242
C++R DGV+P +S T E CT + V SC E+ +DTP
Sbjct: 251 CFVRSGDGVVP-ESTTTGMEL-CT--IGGNGGVSVGSCWREIVADTP 293
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 35 HEIYMIKNNIQAANIMKIKENILFLLMNRSHYLKSLKFLPV--YLVIFSRRLCLKNT 199
HEI M+K+ ++ + + K ++ L NRS LK L + L + R CL +T
Sbjct: 734 HEIQMLKSKMRDSQLQKFRDE----LRNRSRVLKMLGHIDADGVLQLKGRAACLIDT 786
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,221
Number of Sequences: 37544
Number of extensions: 265399
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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