Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G08
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -1

Query: 245 PCVYLYKARRKYSHNLCSLNK 183
           P  Y Y  +  Y H + S NK
Sbjct: 88  PDTYFYNGKHSYLHTITSPNK 108


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 358 VLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPVCTFTKPEENTHI 203
           +L  D+  Y+ +    +      A +  S  + LSS   +   TKPE +  I
Sbjct: 509 ILSMDNTQYNLDLSLPQLDSTELADLDISLSENLSSGLSISDSTKPETSKGI 560


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 53  KNNIQAANIMKIKENILFLLMN 118
           K  +QA   +K+K  I F+L++
Sbjct: 346 KETLQAITGLKVKRRISFILVH 367


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 179 RLCLKNTDYVSIFFWLCKGTHRG 247
           +L +KN DY     ++C+ +  G
Sbjct: 458 KLIIKNVDYADTGAYMCQASSIG 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,009
Number of Sequences: 438
Number of extensions: 3137
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)