Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_G04
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0570 - 4231100-4232560 30 1.3
09_04_0179 - 15366119-15366916 30 1.8
04_01_0464 + 6006021-6006082,6006249-6006519 29 2.3
12_02_1243 + 27300978-27301682 29 3.1
09_04_0181 + 15371687-15372011,15372105-15372214 29 3.1
01_01_0073 + 555485-556315 29 3.1
02_05_0059 - 25482207-25482271,25482432-25482651 29 4.1
08_01_0229 + 1834102-1834358,1834442-1834901 28 5.4
06_01_0962 - 7407829-7408025,7408219-7408279 28 5.4
03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156 28 5.4
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 28 7.1
06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652 28 7.1
05_01_0214 - 1615519-1616775 28 7.1
04_01_0352 - 4619946-4619984,4620062-4620133,4621515-4621880,462... 28 7.1
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 28 7.1
12_02_0046 + 12830974-12832386 27 9.4
11_04_0008 + 12115147-12115354,12115397-12116130 27 9.4
10_08_0233 - 16061182-16061714,16062765-16063578 27 9.4
10_08_0223 - 15986763-15987575 27 9.4
05_05_0142 - 22673607-22674134 27 9.4
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444... 27 9.4
01_06_0509 - 29921224-29924589 27 9.4
>01_01_0570 - 4231100-4232560
Length = 486
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 249 GGMGLGQRLRDHSLAGGSGV-RGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGG 419
GG+G G L + GGSG G + A V GI G G GA +G GG
Sbjct: 205 GGVGGGGELGGGGMGGGSGFGGGAGGGFGAGGGVGGGIGVGGGMGGGASGGIGGGAGG 262
>09_04_0179 - 15366119-15366916
Length = 265
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1
Query: 221 GHGLDYAHGLDYGHGLDYAHGLPHGLPHGLAHG 123
GHG A G YG G HG G +G HG
Sbjct: 188 GHGQRNASGSGYGDGHGEGHGYGQGSGYGEGHG 220
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 221 GHGLDYAHGLDYGHGLDYAHGLPHGLPHGLAHGW 120
G G Y G GHG A G +G HG HG+
Sbjct: 176 GSGSGYGEGHGEGHGQRNASGSGYGDGHGEGHGY 209
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 224 AGHGLDYAHGLDYGHGLDYAHGLPHGLPHGLAHG 123
+G G HG +G+G +G HG HG G
Sbjct: 195 SGSGYGDGHGEGHGYGQGSGYGEGHGSGHGQGSG 228
>04_01_0464 + 6006021-6006082,6006249-6006519
Length = 110
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 360 TSVGDNGSGAIRSVGDHGGGYVTNQ 434
+ VG +G G+ R GDHG G T Q
Sbjct: 40 SGVGGDGDGSERGTGDHGAGSGTEQ 64
>12_02_1243 + 27300978-27301682
Length = 234
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 239 PLLAYAGHGLDYAHGLDYGHGLDYAHGLPHGLPHGLA-HG 123
PLL++ HG A G Y +G HG HG A HG
Sbjct: 153 PLLSFQVHGFPDATAYGQPAGFPYGYGHGHGHGHGHAFHG 192
>09_04_0181 + 15371687-15372011,15372105-15372214
Length = 144
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -1
Query: 230 AYAGHGLDYAHGLDYGHGLDYAHGLPHGLPHGLAHG 123
+YAG G Y G YG G GL G +G G
Sbjct: 104 SYAGSGSGYGEGGGYGRGSGNGSGLEFGEGYGYGSG 139
>01_01_0073 + 555485-556315
Length = 276
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 246 LGGMGL-GQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGG 419
L G GL G D ++ G GV G C + G++ G G +S GD GGG
Sbjct: 85 LAGEGLVGLPEGDGAIGGAHGVLGDLRCGGGGDCTTGGVSERA-GGLGGGKSAGDDGGG 142
>02_05_0059 - 25482207-25482271,25482432-25482651
Length = 94
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 237 RRDLGGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGG 416
RR GG GQ++ D GG ++G + S G ++ G G G++ G++GG
Sbjct: 19 RRRRGG---GQQVND---GGGGSMKGGGDSGSLARGGDGGGSTWGGGGGGSVGRGGNNGG 72
Query: 417 G 419
G
Sbjct: 73 G 73
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 246 LGGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGD 407
L G + +R D L G G +S T + + VGD G+G VG+
Sbjct: 85 LRGRAVAERRDDDGLKWGGGEDAVSATRWGRTAMGDAVEEVGDGGTGVDGVVGE 138
>06_01_0962 - 7407829-7408025,7408219-7408279
Length = 85
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 246 LGGMGLGQRLRDHSLAGGSG-VRGMSEHWSAITCVSSGITSVG 371
+GGM G +++GG G V G S + S+I CV G SVG
Sbjct: 36 IGGMRGGIAGVRGNVSGGRGDVNGHSHNISSIICVGGGRDSVG 78
>03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156
Length = 405
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = +3
Query: 252 GMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGY 422
G G G + G G S HW A C S + G G GA G GGGY
Sbjct: 96 GSGSGSGGAQVARGGACFKCGDSCHW-ARECPQSVPATGGGGGGGAFGGSGGGGGGY 151
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 267 QRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGYVTNQLLGE 446
Q +R A S + +S+H S T +S G+ + +G+G +S+G V N G
Sbjct: 354 QSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTG--QSIGSQ--QVVQNTAFGS 409
Query: 447 NXXXXXXXTVQL--SLNGLDS 503
N + + SL G+ S
Sbjct: 410 NTPITGNSNIAVSSSLGGIQS 430
>06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652
Length = 327
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 276 RDHSLAGGSGVRGMSEHWSAITCVSSGITSV 368
+ +S AG S + M+ H SAI V S +TSV
Sbjct: 78 QQNSGAGFSSTKRMTSHMSAIVVVKSTVTSV 108
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 215 GLDYAHGLDYGHGLDYAHGLPHG 147
G D+ HG +GHG ++H HG
Sbjct: 181 GHDHGHGHGHGHGHGHSHDHDHG 203
>04_01_0352 -
4619946-4619984,4620062-4620133,4621515-4621880,
4622240-4622713
Length = 316
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 234 QRRDLGGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGIT 362
+ R + G G LR AGG GVR + H + + C SG T
Sbjct: 195 EERAVAG-GAVAELRPGGRAGGGGVRVRARHRAGVPCPLSGQT 236
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 415 PPWSPTLRMAPLPLSPTLVMP 353
PP S ++MAPLP PTL P
Sbjct: 148 PPGSMPMQMAPLPRPPTLPPP 168
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 418 PPPWSPTLRMAPLPLSPTLVMPELTQVMA 332
P P P+LR AP ++P +P +TQ A
Sbjct: 243 PQPAPPSLRTAPAAVAPPRQVPVITQQQA 271
>11_04_0008 + 12115147-12115354,12115397-12116130
Length = 313
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 237 RRDLGGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIR 395
+R+ G +GL LR +LAGG GV G++ +A + +G +G G +R
Sbjct: 188 QREPGAVGLALSLRASALAGGGGV-GLAT--AAAVVGAWARQGIGRDGVGFVR 237
>10_08_0233 - 16061182-16061714,16062765-16063578
Length = 448
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 291 AGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGY 422
AGG G E+ ++ G TS NG G G GG Y
Sbjct: 344 AGGGSASGAGENIDTVSTGYGGSTSAAGNGGGG--GGGQAGGSY 385
>10_08_0223 - 15986763-15987575
Length = 270
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 291 AGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGYVT 428
AGG G G S G+ + +G+G S G GGGY +
Sbjct: 191 AGGGGGGGGGHGGGPAASPSYGVGAGAGSGAGDAGSDGSSGGGYAS 236
>05_05_0142 - 22673607-22674134
Length = 175
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +3
Query: 264 GQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGYV 425
G+R R G GV G E G+ G+ G G G+ GGG V
Sbjct: 114 GRRWRGRGGGGEEGVEGSGEGGGEGGGGEEGVEGDGEGGEGGGFDGGEGGGGEV 167
>03_05_0902 +
28643395-28643708,28643830-28643921,28644342-28644443,
28645135-28645185,28645267-28645328,28645664-28645754,
28645911-28645975,28646053-28646247,28646346-28646465,
28646630-28646700,28646839-28647064,28647474-28647524,
28647629-28647857,28648140-28648279,28648527-28648652
Length = 644
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 418 PPPWSPTLRMAPLPLSPTLVM-PELTQVM 335
P PW P L MA PL VM PE +V+
Sbjct: 61 PKPWRPDLDMALTPLRFAFVMHPEFREVV 89
>01_06_0509 - 29921224-29924589
Length = 1121
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 249 GGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGS--GAIRSVGDHGGGY 422
GG G +L+ L+G + +RG +A+ G+ ++ +G GA + G G G+
Sbjct: 111 GGARCGSKLQALDLSGNAALRGSVADVAALASACGGLKTLNLSGDAVGAAKVGGGGGPGF 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,280,330
Number of Sequences: 37544
Number of extensions: 181991
Number of successful extensions: 1074
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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