Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G04
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    28   6.4  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    28   6.4  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 551 GQAVNAAVDHSWQAVDAVKTVEAKL 477
           G  V AAVDH+ Q+ DA+ T+E ++
Sbjct: 515 GTFVPAAVDHAVQSTDAITTIECRI 539


>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 251 AQIAPLLAYAGHGLDYAHGLDYGHGLDYAHGLPHGLPHGLAH 126
           A  A     A H   +AH  D+GH  D+ H   H   HG +H
Sbjct: 65  AAAAEAATAAAHDHGHAHDHDHGHAHDHGHAHDH---HGHSH 103


>U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical
           protein F22H10.2 protein.
          Length = 102

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 197 GLDYGHGLDYAHGLPHGLPHGLAHG 123
           G  +GH   + HGL HGL H L  G
Sbjct: 56  GHHHGHHHHHHHGLLHGLGHALTGG 80


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 227 YAGHGLDYAHGLDYGHGLDY-AHGLPHGLPHGLAHG 123
           +  HG+ + H   +GHG    AH   HG  HG+ HG
Sbjct: 580 HGSHGVHHGHHESHGHGHHAPAHHGHHG-EHGVHHG 614



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 227 YAGHGLDYAHGLDYGHGLDYAHGLPHGLPHGLAH 126
           +A H   + H  D+ HG    H   HG  H LAH
Sbjct: 633 HAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAH 666


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 418 PPPWSPTLRMAPLPLSP 368
           PPP  PT+R  P+P SP
Sbjct: 93  PPPPKPTIRPPPIPASP 109


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 418 PPPWSPTLRMAPLPLSP 368
           PPP  PT+R  P+P SP
Sbjct: 315 PPPPKPTIRPPPIPASP 331


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 294 GGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGY 422
           GG G  G   + SA +    G  + G  GSG   + G  GGGY
Sbjct: 213 GGGGSSGGGGYASAPSG-GGGYATSGGGGSGGYATGGSSGGGY 254


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 294 GGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGY 422
           GG G  G   + SA +    G  + G  GSG   + G  GGGY
Sbjct: 213 GGGGSSGGGGYASAPSG-GGGYATSGGGGSGGYATGGSSGGGY 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,742,813
Number of Sequences: 27780
Number of extensions: 113577
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)