Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G03
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...   130   2e-31
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    36   0.009
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    34   0.021
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    29   0.61 
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    29   1.1  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    28   1.4  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    28   1.9  
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    27   3.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.3  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    26   5.7  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score =  130 bits (315), Expect = 2e-31
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 4/224 (1%)
 Frame = -1

Query: 816 DTPHNPLGKVFTQRELELIADLCKKHNVLCLSDEVYEWMVYEPKQHIRIASF-PGMWERT 640
           +TPHNPLGK+F++ EL  IADL  KHN+L +SDEVY+ + + P   +R+A+  P +++  
Sbjct: 184 NTPHNPLGKIFSEEELNEIADLVLKHNLLVVSDEVYDRLSFVP--FVRLATLRPELFKHV 241

Query: 639 ITVGSAGKTFSVTGWKIGWAYGPADLMRNLQVVHQNCVYTCCTPVEEAVARSFEYELARR 460
           +TVGS GKTF  TGW++GW  G   L++     H    +   +P +EA+A +F  E  + 
Sbjct: 242 VTVGSGGKTFGCTGWRVGWLIGDESLIKYSAAAHTRICFAVNSPCQEALAIAFG-EAEKH 300

Query: 459 DSPECYFYSLARELRPKRDYLMKILKENGFKPTLPEAGYFVVADWTDLE--KKIDLSSEL 286
           +    Y+       + + + L K   +     T+P+  Y+ +A+++ L+  K      E+
Sbjct: 301 N----YYEEYKSSYKKRFEILAKAFDQLEIPYTIPDGSYYTMANFSKLKLPKDYPFPEEI 356

Query: 285 -XXXXXXXXXXXXXKEAGVLAIPPSAFYSEAHKHLGETFARFCF 157
                         KE GV  IPP+ FY++    + E + RF F
Sbjct: 357 ANRPRDFKLCYWILKEIGVATIPPTEFYTDEDAPVAENYLRFAF 400


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 810 PHNPLGKVFTQRELELIADLCKKHNVLCLSDEVYEWMVYEPKQH 679
           P NP G   ++  +E +    K   ++ L+DEVY+  +Y+ K H
Sbjct: 252 PGNPTGACISENSMEKVLRFAKAKGIVLLADEVYQNNIYQNKFH 295


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 34.3 bits (75), Expect = 0.021
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 762 IADLCKKHNVLCLSDEVYEWMVYEPKQHIRIASFPGMWERT-ITVGSAGKTFSVTGWKIG 586
           I DL KK+  +   DEV+   +Y P+        PG+  R  I  G+  K++   G  I 
Sbjct: 328 ICDLAKKYGAITFLDEVHAVGMYGPRGAGVAEETPGLLSRVDIITGTLAKSYGCVGGYIA 387

Query: 585 WAYGPADLMRNL 550
            +    D++R+L
Sbjct: 388 ASSTLVDMIRSL 399


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 813 TPHNPLGKVFTQRELELIADLCKKHNVLCLSDEVYEWM 700
           T  NP G   +    + I  L +KH+++ L DE Y ++
Sbjct: 214 TGQNPTGSTLSVERRKQIYTLAQKHDIIILEDEPYYYL 251


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
 Frame = -1

Query: 813 TPHNPLGKVFTQRELELIADLCKKHNVLCLSDEVYEWMVYE--------PKQHIRIASF- 661
           T  NP G   T    +    L KK++++ + DE Y ++  E         KQ   I+SF 
Sbjct: 210 TGQNPTGSTLTLERRKKFLTLAKKYDIIIVEDEPYYFLQMEKYDANWKPDKQAFNISSFK 269

Query: 660 ----PGMWE-----RTITVGSAGKTFSVTGWKIGWAYG 574
               P +       R + V S  K   V G ++GW  G
Sbjct: 270 KKLIPSLLHLDTDGRVLRVDSFSKLI-VPGLRLGWITG 306


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 399 LMKILKENGFKPTLPEAGYFVVADWTDLEKKID 301
           +M+ILK NG  P LPE  Y ++     + K ++
Sbjct: 71  IMRILKANGLAPELPEDLYNLIKKAVSVRKHLE 103


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 539 CTTCRFLIRSAGPYAHPIFHPVTEN 613
           C  C    +  GP +H  FH +TEN
Sbjct: 89  CLVCGRYFQGRGPSSHAYFHALTEN 113


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 771 LELIADLCKKHNVLCLSDEV 712
           LE    LCK HNVL ++DEV
Sbjct: 229 LEEAYKLCKAHNVLFIADEV 248


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 362  LYPRPGTLSWPIGLTWKRRSTYRANWTNTKITSSQRNSLKR 240
            ++   G  SW  GL W++ S +  +    K+T++QR+ L +
Sbjct: 1513 MFKATGFPSWE-GLFWEKASGFEESMKFKKLTNAQRSGLNQ 1552


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 584 HPIFHPVTENVFPADPTVMVLSHMPGKDAIR 676
           H  F PV    +   PT+ +LS + G+DA++
Sbjct: 223 HAKFSPVATASYRLLPTIHILSPIEGEDAVK 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,990
Number of Sequences: 5004
Number of extensions: 63940
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)