Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G01
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      36   0.008
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    26   6.8  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   9.0  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   9.0  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 755 QFXMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 615
           QF   +NI  F   I   G+P+I  F+  D++E K++ +V+  + AL
Sbjct: 97  QFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 19   NKYFNLIQNLLSLCT-NSYQALLN 87
            N + +L+Q LLS CT  S  ALLN
Sbjct: 1226 NSFHSLVQKLLSCCTEGSINALLN 1249


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 37  IQNLLSLCTNSYQALLNF 90
           I N++++C+NSY  L+N+
Sbjct: 95  ILNIVTICSNSYSILVNY 112


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 508 WPAFRTSSEKSRLHSSAGLGPRQGPLHSA 594
           WP FR+   +S L+ ++G  P   P +S+
Sbjct: 112 WPYFRSLRRESMLYHTSGSYPESQPPYSS 140


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 298 YHFRVDIHKGLQSHISVHYHTNLYKIILKINITFCW 405
           Y++ V I + LQS+IS        K IL I    CW
Sbjct: 202 YNWWVSILRRLQSNISTSERITYTKAILAIAKHHCW 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,435
Number of Sequences: 5004
Number of extensions: 62173
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)