Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_G01
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876...    32   0.58 
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811...    30   2.3  
02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    30   2.3  
10_08_0526 + 18547154-18547197,18547320-18547467,18547558-185476...    29   4.1  
11_02_0102 + 8314115-8314540                                           28   9.4  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    28   9.4  
02_03_0277 + 17218693-17219188,17219278-17220269                       28   9.4  

>04_04_0419 +
           25086456-25086768,25087302-25087369,25087458-25087681,
           25087929-25088012,25088593-25088806,25089252-25089428,
           25089526-25089645,25089865-25089991,25090104-25090130,
           25090526-25091007
          Length = 611

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 756 TVXNDGEHHKLPVCNQSIRCTRHRCVPNRRSMGEKRHRPSSQH 628
           TV  +  HHKL    Q I   R R +   +S G+ R +   QH
Sbjct: 461 TVNGNNAHHKLYATMQDIAVRRRRAIVQGKSWGKTRSQERQQH 503


>09_02_0374 -
           8112021-8112820,8112908-8113152,8113256-8113455,
           8113584-8114235,8114369-8114661
          Length = 729

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 547 HSSAGLGPRQGPLHSACL*DSRPRANSVLTTWAMSFFSHRSTVWNTSMSGTPYALIADWK 726
           HSS G+   + PLH+  + DSR  A  V      S     +  W  +++   Y++ + W+
Sbjct: 306 HSSFGVSKLKYPLHTLLVFDSRQHALPVAWIITRSVTKQDTLRWMKALTERIYSVDSTWR 365

Query: 727 FVMFSI 744
              F I
Sbjct: 366 IGGFVI 371


>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -3

Query: 617 LGRE-SYRHAEWSGPCLGPKPAD---ECKRDFSDEVLKAGQTVIGLQAGSNKG 471
           L RE S +++++ GPCL   P D    C++D++ +  +  +  +G   G+  G
Sbjct: 72  LRRELSGKNSKYKGPCLATNPIDRCWRCRKDWATDRKRLARCAMGFGRGATGG 124


>10_08_0526 +
           18547154-18547197,18547320-18547467,18547558-18547604,
           18548216-18548270,18548365-18548403,18548517-18548688,
           18549135-18549201,18549378-18549434,18549637-18549873,
           18551549-18551629,18551803-18551935
          Length = 359

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 762 RWTVXNDGEHHKLPVCNQSIRCTRHRC---VPNRRSMGEKRHR 643
           R TV N G   ++ +      CTRH C   VP   S G  +H+
Sbjct: 135 RSTVSNQGNDREIEISETKGSCTRHLCNISVPLTVSTGSHKHK 177


>11_02_0102 + 8314115-8314540
          Length = 141

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 484 PACR-PITVWPAFRTSSEKSRLHSSAGLGPRQGPLHSACL*DSRPRANS 627
           P CR P  V     + + + R  +  GLGPR+G   S+C+  S  R  S
Sbjct: 23  PGCRRPRLVELGASSGATRQRESNDTGLGPRRGRPPSSCVDGSLGRRRS 71


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 629 C*LLGRCLFSPIDLRFGT--HRCRVHRML 709
           C L+ R L  P+D+RF +    CRVH ++
Sbjct: 476 CELVNRSLVQPVDIRFDSKARACRVHDIM 504


>02_03_0277 + 17218693-17219188,17219278-17220269
          Length = 495

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 138 PFGTKWYNYSRLI*PIASPXNN 203
           P GT W N  R++  + SP NN
Sbjct: 473 PSGTSWVNLDRMVNEVFSPGNN 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,751,574
Number of Sequences: 37544
Number of extensions: 406772
Number of successful extensions: 935
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)