Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_F22
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   1.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   1.9  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   4.4  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.8  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    25   7.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.7  
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces...    25   7.7  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 358 WFLQSPPSLKPRTLLLSSWMLLTVSPSTL 272
           + L++PPS++PR +  + W++    P+ L
Sbjct: 284 FILEAPPSMQPRLIQFTRWVVDKADPNFL 312


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -1

Query: 364 PVWFLQSPPSLKPRTLLLSSWMLLTVSPSTLLRSSLPAPLTSRQKLCLATTTSAS 200
           PVW   S P   P T   SS    T  P+T   SS   P +S +   +A++ SAS
Sbjct: 124 PVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTE---VASSYSAS 175


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 17  KYIKSFLPWVDAKG 58
           KY+K FLP+VDA G
Sbjct: 177 KYLKEFLPYVDAIG 190


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 364  PVWFLQSPPSLKPRTLLLSSWMLLTVSPSTLLRSSLPAPLTS 239
            P W   +  S   ++ L+ S   L+ +PS+L RSS+ +  +S
Sbjct: 954  PDWISNTKQSFDKKSSLIDSIPALSPAPSSLARSSVSSQRSS 995


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 440 SQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVA--ALSQAPHSPAVVL-DAVNGVPLDTP 270
           S  ++ ++ G+ + +P V   A     + P++A   +    +     L D +NG+P DTP
Sbjct: 383 SNRASMILSGTSMASPHVAGLAAYFISLDPSLANHPVELKKYMLKFALKDLLNGIPEDTP 442

Query: 269 EVVA 258
            V+A
Sbjct: 443 NVLA 446


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 461 VPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVV 306
           +P  SSLS YS+SV+  S  +  +  +++LI      A ++ S  P S ++V
Sbjct: 657 IPISSSLSTYSSSVIPSSSTLVSS--SSSLIVSSSPVASSSSSPIPSSSSLV 706


>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 188 RQQTACGGGGSQTELLPGSERRGQRRPQE 274
           +Q  A  GG  +TE +P + RRG ++ Q+
Sbjct: 175 QQHIAQLGGKKETEKMPMAARRGMKKKQK 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,175
Number of Sequences: 5004
Number of extensions: 43597
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)