Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F21
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0341 + 16942332-16942361,16942907-16943347 31 0.95
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 31 1.3
09_02_0082 - 4060018-4061604 31 1.3
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213... 31 1.3
07_03_0808 - 21668100-21669092 30 1.7
04_01_0034 - 401208-402923 29 2.9
01_05_0048 - 17561963-17563585 29 3.8
03_06_0106 - 31682200-31682775 29 5.1
08_01_0082 - 588269-588434,590800-591653 28 6.7
06_01_0882 + 6759378-6759707,6759837-6760488,6760609-6760673,676... 28 6.7
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 28 6.7
04_04_1170 + 31449978-31450135,31451625-31451661,31452158-314522... 28 6.7
03_03_0126 + 14665374-14665539,14665790-14666127 28 6.7
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 28 6.7
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 28 8.8
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 28 8.8
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 28 8.8
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 28 8.8
01_07_0176 - 41733845-41734834,41736058-41736588 28 8.8
01_06_1765 + 39735629-39736240 28 8.8
01_06_1425 - 37273311-37273697 28 8.8
>10_08_0341 + 16942332-16942361,16942907-16943347
Length = 156
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 390 TSTQSRRVCTRETPSMTSGPPPPAGDSPRT 301
TSTQSR + ++TP+ T PPP G P T
Sbjct: 120 TSTQSRYLLAKDTPA-TLRPPPSEGTPPST 148
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = +2
Query: 128 SAIALTSVSGHGPVSVAHLSPRVEPALHVAIGRVLVRAFRRRELS*YHLLQHVRRGAPVL 307
S+ L+SVS P L PR P A+ + +R + + ++ VRR V+
Sbjct: 27 SSARLSSVSECPPPPPPPL-PRPRPP-PPAVEALRIRLVSKGVILEVAEVERVRRECRVV 84
Query: 308 GESPAGGGGPLVIDGVSRVQTRRDCV 385
G GGGG + ++G V+ R+ V
Sbjct: 85 GRILGGGGGEVAVEGKVEVEAIREAV 110
>09_02_0082 - 4060018-4061604
Length = 528
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 617 GGAHQ*ALRAHSRTLPIQ*RGWRSQIRVYRRPRP--ARDHEPVPPLRSHPRSQTP 459
GGA + H+ T P+ R +RV R+PR P PP+ + P TP
Sbjct: 299 GGASSSSAMPHAATAPLALRTPAPHLRVSRKPRSLVLTPPAPAPPVATPPTPATP 353
>03_06_0559 +
34719296-34719410,34719519-34719577,34719664-34721322,
34722421-34722562,34722645-34723330
Length = 886
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 236 GQVPDQSQHEARVRPSDSDVLRRQDHVQRH 147
G++PD H + RPSD D+ R RH
Sbjct: 430 GRLPDGRIHSVKTRPSDKDIADRSQRRVRH 459
>07_03_0808 - 21668100-21669092
Length = 330
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3
Query: 530 RRPRPARDHEPVPPLRSHPRSQTPR 456
RRPR AR H+ P LR P S PR
Sbjct: 140 RRPRRARGHQHQPALRHLPPSTAPR 164
>04_01_0034 - 401208-402923
Length = 571
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 360 RETPSMTSGPPPPAGDSPRTGAPRRTCCR 274
R PS PPPP PR AP C R
Sbjct: 316 RAKPSRPPPPPPPLDPPPRAAAPPAKCKR 344
>01_05_0048 - 17561963-17563585
Length = 540
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 267 TTFCSTSDVEPRFSVSPQPVAEARS---SLTASPVCR 368
TT S SDVEPRF+V P E + S A VCR
Sbjct: 61 TTVGSESDVEPRFTVVPGAAQEGLAPGVSEAAERVCR 97
>03_06_0106 - 31682200-31682775
Length = 191
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +3
Query: 579 PAVSTKR----SLMSTPPHSHWMFATSSP*PSRTMCGYSLT 689
P ST R S S PP S W S P P R+ G++LT
Sbjct: 107 PPTSTSRGRATSHSSAPPRSCWTLTASHP-PPRSAAGFALT 146
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 53 GPTKRRHAYHDVHTVHLLAFYLYRTSAIALTSVSGHGPVSVAHLSP 190
G R+ V V +L+ L R S+ + +S SGH P HL+P
Sbjct: 2 GSNDHRNVALAVDRVRVLSRRLVRPSSSSSSSSSGHAPPCDIHLTP 47
>06_01_0882 +
6759378-6759707,6759837-6760488,6760609-6760673,
6761363-6761440,6761523-6761633,6761739-6761783,
6762200-6762373,6762841-6763797
Length = 803
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 351 PSMTSGPPPPAGDSPRTGAP 292
P T+ PPP G +PR+ AP
Sbjct: 212 PDATAPAPPPPGSNPRSSAP 231
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 384 TQSRRVCTRETP-SMTSGPPPPAGDSPRTGAPR-RTCCR 274
T +RR R P + T PPPP G PR AP CR
Sbjct: 18 TTARRRPLRLLPGNRTPHPPPPQGSRPRKPAPTPAAACR 56
>04_04_1170 +
31449978-31450135,31451625-31451661,31452158-31452273,
31452389-31452419,31452597-31452662,31452753-31452818,
31452969-31453223,31453598-31453687
Length = 272
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 1 YVVADPGCXSRARPRSHRPDQTTSRLSRRTYSPSSCFLS 117
Y+ ADP RP RP Q T +R + S FLS
Sbjct: 180 YITADPSQIPPIRPSEPRPFQITHATQQRQSNVESDFLS 218
>03_03_0126 + 14665374-14665539,14665790-14666127
Length = 167
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 513 CRARAPIYTYLTAPTSLLDRQCPAVSTKRSLMSTPP 620
CR RA T A T+L RQCP R + PP
Sbjct: 99 CRERATSTTTTVAATTLGHRQCPWPPPPRGGLLVPP 134
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 387 STQSRRVCTRETPSMTSGPPPPAGDSPRTGAPR 289
S SR TRE+P+M PPPP P +GA R
Sbjct: 297 SFYSRVGSTRESPAMMMPPPPPL---PSSGAGR 326
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 197 RPSDSDVLRRQDHVQRHLSG 138
RP D D +RR+ H+ HL+G
Sbjct: 128 RPDDLDDVRREVHIMHHLTG 147
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 396 RWTSTQSRRVCTRETPSMTSGPPPPAGDSPRTGAP 292
R +++ + R+ +R P PPPP G P P
Sbjct: 9 RQSASSATRMASRARPGFPVAPPPPMGPPPPPPMP 43
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 348 SMTSGPPPPAGDSPRTGAPRRTCCRRWY 265
S+ SGPP P G +P P+ C ++
Sbjct: 19 SVWSGPPYPTGSAPPVRLPKTACSATYF 46
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 554 WRSQIRVYRRPRPARDHEPV--PPLRSHPRSQT 462
W +IRVYRR P ++ +P P S P +QT
Sbjct: 38 WAPEIRVYRRKYPRKNPKPPPNPSPSSSPLAQT 70
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 296 APVLGESPAGGGG 334
AP+ GESP GGGG
Sbjct: 434 APIYGESPGGGGG 446
>01_06_1765 + 39735629-39736240
Length = 203
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 396 RWTSTQSRRV-CTRETPSMTSGPPPPAGDSPRTG 298
RW + V C+++ P S PPPP + R G
Sbjct: 76 RWFEEEREPVICSKKKPEPCSAPPPPPPPANRNG 109
>01_06_1425 - 37273311-37273697
Length = 128
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 405 DRYRWTSTQSRRVCTRETPSMTSGPPPPAGDSPRTGAPRRT 283
DR R + R++ E S PPPP P +G + T
Sbjct: 85 DRVRGLQARLRQLAAAEESQAASTPPPPPQQPPLSGPGKPT 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,554,998
Number of Sequences: 37544
Number of extensions: 566456
Number of successful extensions: 3140
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3132
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -