Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_F19
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   7.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   9.5  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 606  FNSSSNRLLIQF*SHKINSTHSLCPNVWASNF 701
            F ++SN +  +F S+  NST SL P V  +NF
Sbjct: 3885 FRNTSNTMTSRFVSNDFNSTISLQPVVQFNNF 3916


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 442 EPARRIEGGKLPFGGEIFPDSRSCSSCISFTLHFSLFFNVMIKF 573
           +P  +     +P    I P     S+   F L  SLFF + +KF
Sbjct: 311 QPMPQFSSSFVPGTSSIVPTLHPASAQEDFNLQHSLFFKLKLKF 354


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 317  SAKLVALVALRSDYPKSVPIFSLTLHWNGTHHAGIN 210
            SA+L+ LV  R+D      I  L  HW     AG N
Sbjct: 2127 SAELIKLVYQRADNENFNLIRQLLSHWTSVEKAGKN 2162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,678
Number of Sequences: 5004
Number of extensions: 60440
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)