Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F18
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 30 0.38
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.67
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.88
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 28 1.5
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 3.6
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 27 3.6
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 27 4.7
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 27 4.7
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 27 4.7
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 8.2
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 8.2
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 8.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 8.2
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 8.2
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 8.2
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 30.3 bits (65), Expect = 0.38
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -2
Query: 654 FRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKD-TCIDDEK 478
++K+L N +DD E E++V+ + ++DN S KD T I EK
Sbjct: 420 YQKLLSGDADDFQANSNPFEDDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTI--EK 477
Query: 477 SKKENDLNQQKCTNLKKGRKNKND 406
K++ +Q+ L++ +K K+D
Sbjct: 478 YKRKAAERKQRRKELRQLKKTKDD 501
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.67
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Frame = -2
Query: 558 DVSTENWEEIDNLCASFSKDTCIDDEKSKKENDL--NQQKCTNLKK-GRKNK--NDLTTQ 394
D+S +N E +DN S+D+ +DE ++K +L + +K T+ KK G+KNK + +
Sbjct: 20 DISGQN-EYLDNT----SQDSPQNDELAEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSD 74
Query: 393 DQSLSIQNKSTKKREFTLTGL------YKRLLDKDAVNAHRAEDD 277
D+S +++ K +T L YK K + + E+D
Sbjct: 75 DESQELESPQGPKELTAVTELDDDEFDYKPKKGKKGKKSKKVEED 119
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.88
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Frame = -2
Query: 558 DVSTENWEEID--NLCASFSKDTCIDDEK----SKKENDLNQQKCTNLKKGRKNKNDLTT 397
D + EN EE NL + SK T ++ S K + L +K LKK +++ LTT
Sbjct: 180 DSNVENKEETKDRNLDRALSKFTQSREKNEQNLSSKASVLRNKKSILLKKRNQDETQLTT 239
Query: 396 QDQSLSIQNKSTKKREFTL 340
++ S N ST K E ++
Sbjct: 240 -EEDFSANNDSTAKIETSI 257
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = -2
Query: 537 EEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTK 358
E++ N + + + +DD+ EN + + L +KN + ++QSLS+ ++
Sbjct: 1079 EKVINQLSLYIFEMFMDDDLKLSENSEDWGLFSKLCNLLNDKN-IVVRNQSLSLFHQLVN 1137
Query: 357 KREFTLTGLYKRLLDKDAVNAHRAEDD 277
K F L L + AVN + A+ D
Sbjct: 1138 KYPFLLESWIGLQLVQSAVNTNTADID 1164
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Frame = -2
Query: 486 DEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSI-----QNKST--KKREFTLTGLY 328
+++ K +DLN+QK +K+ ++ NDLT ++L + K T KRE L
Sbjct: 150 EKQVKTLHDLNEQKDKKIKELKERINDLTYDYETLKANADDSEGKQTLVSKREAALEEFQ 209
Query: 327 KRLLDKD 307
+LL ++
Sbjct: 210 SKLLIRE 216
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 273 VILIECVLALRDEFLTWADESCKTIH 196
+ ++ VLA R L W+ E+C T H
Sbjct: 613 LFVVGAVLAWRRRVLRWSQEACDTFH 638
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 849 ESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDY 733
ESL N TF + N I ++ P + H NS+++
Sbjct: 671 ESLNNLSTFSELLNIIDGLSSDSRSPKTVGTHESNSYEF 709
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -2
Query: 474 KKENDLNQQKCTNLKKGRKNKNDL---TTQDQSLSIQN-KSTKKREFTLTGLYKRLLDKD 307
+ E++ ++ + N +K D+ T++D+ ++ N ++ K+R+F G +RL K
Sbjct: 43 ESESEEDEDQILNKEKKEGQSEDMFSDTSEDEKRTLPNDEAQKRRDFIENGDAERLAHKG 102
Query: 306 AVNAHRAEDD 277
N DD
Sbjct: 103 LRNKEVLNDD 112
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -2
Query: 564 ELDVSTENWEEIDNLCASFSKDTCIDD-EKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQ 388
E T + E+ D+ S S +CI D E+S +++LN+ +N KK ++ T +
Sbjct: 250 ESSYETSSSEQSDD---SSSSSSCISDSEESSSDDELNE--LSNEKKANSPTQNVDTSSK 304
Query: 387 --SLSIQNKSTKKR 352
S+ QN+ + R
Sbjct: 305 LSSVKFQNEDDEDR 318
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 4.7
Identities = 25/92 (27%), Positives = 40/92 (43%)
Frame = -2
Query: 657 GFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEK 478
G + I KTT + LP ++ + ASE+L L + T N + +C + E
Sbjct: 142 GIKAIFKTTVQFLPTRLAKIFEKKASEVLKDNL-LQTCNSKREGEVC-DVKEPAVASSES 199
Query: 477 SKKENDLNQQKCTNLKKGRKNKNDLTTQDQSL 382
S ND+ Q+ N+ R N Q++ L
Sbjct: 200 SDCFNDM--QELNNIVDLRDYSNSRFQQNRLL 229
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 546 ENWEE---IDNLCASFSKDTCIDDEKSKKENDLNQQKCTNL 433
E WE+ ++ AS +K T D +K K+E+ ++ C+NL
Sbjct: 125 EEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCPACSNL 165
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 756 HNGNSFDYKILLAECNDAGILLPSDLLC--IDSLIGFRKILKTT 631
H+G ++ + E + G L DL + LIGFRK L +T
Sbjct: 149 HSGTIAQWRDTIEEIHRRGFYLVLDLTISTLGDLIGFRKYLNST 192
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 8.2
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = -2
Query: 603 TSKDDSASELLWPELDVSTENWEEIDNLCAS--FSKDTCIDDEKSKKENDLNQQKCTNLK 430
T ++ EL+ E + + + N+ S F + C++ E ++NDL + + +LK
Sbjct: 462 TGAGNNCLELVGKENNCKNQYPQYFSNIDESNAFINNQCLELEALNRKNDLIRGELDSLK 521
Query: 429 -KGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRL 319
K + L + + +L ++ K + E T L K L
Sbjct: 522 EKNLVAQKQLKSANNTLHVRAKHIQILENTNQSLKKNL 559
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 203 VLQDSSAHVKNSSRRANTHSISITQSSSALCAFTASLSS 319
++ SS+ + +SS A++ S I SSS + ++ASLS+
Sbjct: 677 LVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSN 715
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 744 SFDYKILLAECNDAGILLPSDLLCIDSLIG 655
SFD +L+ GIL+ +DLL I S G
Sbjct: 475 SFDRTLLILPGGSTGILIINDLLVIRSFAG 504
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -2
Query: 630 QKSLPLKMNTSKDDSASELL---WPELDVSTE-NWEEIDNLCASFSKDT 496
Q L +K +T KDD+ ELL E++V+ E N E++D L KDT
Sbjct: 228 QAKLGIKASTQKDDNDFELLNNTTGEIEVTKELNEEQLDAL-RKKDKDT 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,925
Number of Sequences: 5004
Number of extensions: 65536
Number of successful extensions: 292
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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