Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F18
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0708 + 10577931-10579511,10579613-10579706,10580694-105808... 40 0.002
04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044 39 0.005
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346... 33 0.23
08_01_1081 + 11058119-11059756 31 0.93
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730 31 1.2
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 31 1.6
11_06_0284 + 21909758-21913645 30 2.8
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 30 2.8
09_02_0288 + 6936867-6936879,6936965-6937038,6937445-6937588,693... 29 4.9
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 28 8.6
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 28 8.6
>03_02_0708 +
10577931-10579511,10579613-10579706,10580694-10580856,
10581286-10581491,10581854-10582062
Length = 750
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = -2
Query: 777 KPICLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 619
KP+ VAHNG SFD L+ E + I +P D L +D+L R+++ + + L
Sbjct: 633 KPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIGSDGEKL 685
>04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044
Length = 260
Score = 39.1 bits (87), Expect = 0.005
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -2
Query: 777 KPICLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQK 625
KP+ VAHN FD + L E + LP+D L D+L+ +K++K K
Sbjct: 147 KPVLWVAHNAKQFDARFLAQEFDRCSAPLPADWLFFDTLLLAKKMVKAEGK 197
>04_04_0027 +
22232781-22233051,22234256-22234329,22234471-22234638,
22234812-22234971,22235062-22235145,22235781-22236078,
22236158-22236364,22236465-22236735,22236971-22237055,
22237141-22237182,22237302-22237350,22237825-22237894,
22238314-22238463,22238592-22238619,22238856-22238990,
22240693-22241469,22242133-22242192,22242367-22242413
Length = 991
Score = 33.5 bits (73), Expect = 0.23
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Frame = -2
Query: 612 KMNTSK--DDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCT 439
K TS+ DDS +L+ + E+ D SFS+ D SKK+ +LN + T
Sbjct: 275 KKQTSENGDDSKLQLVVRTPPAESLESEDEDGFPVSFSESKKRTDGSSKKKGNLNNKMST 334
Query: 438 NLKKGRKN--------KNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDA 304
+K + + ++ ++ +S +NK K ++ + G+ K + +D+
Sbjct: 335 EDRKRKSSAVGDHHDPSGEVKDENDGVSKKNKKAKAKKTAVGGVEKEIKQEDS 387
>08_01_1081 + 11058119-11059756
Length = 545
Score = 31.5 bits (68), Expect = 0.93
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -2
Query: 477 SKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLD 313
+K ++ + K KK RKN +D ++ L ++ K K E GL +LD
Sbjct: 296 NKNPDETKETKKKKKKKRRKNNDDDEEEEPGLKVKKKKNKNEEKERPGLKVTMLD 350
>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
Length = 802
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +2
Query: 200 IVLQDSSAHVKNSSRRANTHSISITQSSSALCAFTASLSSSLLYKPVKVNSLFLVLLFC 376
+V+QD H++N + + S I S+L A +S++SS++ K VK + F V+L C
Sbjct: 264 LVMQDHLRHIQNKELQYHYLSHKIQNELSSLMA--SSITSSII-KIVKASKYFSVILDC 319
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = -2
Query: 531 IDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLS-IQNKSTKK 355
ID+L + D + +K +EN + T L +KN T+ S + N TK+
Sbjct: 27 IDSLKKKITSDRFVYIQKRVEENSIKLSPIT-LHSHNLSKNRQTSTSNSTDLVSNLLTKR 85
Query: 354 REFTLTGLYKRLLDKDAVNAHRAEDDC 274
+E L + R D +D+C
Sbjct: 86 KEDALCAVNSRESSPDESEGANCQDEC 112
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = -2
Query: 618 PLKMNTSKD-DSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKE-NDLNQQK 445
P+ ++T++ E+ + + E + A+ + T +D+E+ K+ N+ Q
Sbjct: 550 PIHLHTAQYMQILQEVFLKTISCKAQQQERLAAKQATKTATTTLDEERIKQMINEAKQDI 609
Query: 444 CTNLKKGRKNKNDLTTQDQSLSIQNK 367
L+ G+ +KN T + S+S QN+
Sbjct: 610 LRELQGGKPDKNQATGEHTSVSDQNE 635
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 29.9 bits (64), Expect = 2.8
Identities = 25/110 (22%), Positives = 47/110 (42%)
Frame = -2
Query: 633 TQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLN 454
T + + + S D+ +E L + D+S + EE D+ D+ +D+E E+D +
Sbjct: 527 TDEGMKEEDQLSGDEDDTEELDEDQDISDNDSEENDD---ELELDSDMDEENDVSESDDD 583
Query: 453 QQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDA 304
++ L + + DQ +N S K + L+ +L DA
Sbjct: 584 EELSEKLDDSDEGSDQDDDSDQDDKSKNSSRKANKRKLSDYIGQLNAADA 633
>09_02_0288 +
6936867-6936879,6936965-6937038,6937445-6937588,
6937754-6937958,6938552-6938852,6938952-6939150,
6939393-6939477,6939554-6939595,6939676-6939724,
6939872-6939941,6940296-6940301
Length = 395
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = -2
Query: 546 ENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNK 367
EN +++D S+ ++D+ +KK N ++K + + DLT D+ L +
Sbjct: 204 ENTKDVDETKYPNSE---LNDDTTKKSNGAKKRKGDAISQDHAPLMDLTNADEPLVSKEG 260
Query: 366 STKKREFTLTGLYKRLLDKDAVNAHRAEDDCVIL 265
TKK+ G + D N R +D +I+
Sbjct: 261 RTKKKSKKKGGKQLEVGDGKHSNKIRTLEDGLIV 294
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -2
Query: 492 IDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLD 313
+ E +KKE ++ +Q + K +N D +Q S+ + +T + T + L D
Sbjct: 127 LPSEFNKKEEEIQKQHSSETK-AIENSRDGDSQTTSICPTSNNTSGQCSTSQDPHPELPD 185
Query: 312 KDAVNAHRAEDD 277
+ ++H+A DD
Sbjct: 186 QIVSDSHQAHDD 197
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 375 VLTNFDLEL*GHSYFSDPSLNSYTFADLNHFLFYFFHHQYMC 500
VL ++ L G Y + L+ FADLNHF F F+ C
Sbjct: 146 VLETYEARLSGSRYLAGDFLS---FADLNHFPFTFYFMATPC 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,204,339
Number of Sequences: 37544
Number of extensions: 341210
Number of successful extensions: 946
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -