Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_F15
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    29   0.20 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   2.5  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   2.5  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   2.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   3.3  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    25   4.3  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   4.3  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   5.7  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    24   7.6  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    24   7.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    24   10.0 

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +1

Query: 247  LHRGSVRRRVFILTLDGENIDIINFLXG-SX*LSAD----SHCQFHTQK 378
            L  G V+ + F+L +D E IDI+ +  G    +S D    S+C F+ QK
Sbjct: 970  LRSGLVKHKAFVLAVDQEYIDIVIYEFGLERRISLDLLPLSNCDFNEQK 1018


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 279  EYSAPDGTPVKFTYTADENGYQPQ-SELLPVAPPMP 175
            +Y   +   V+ T T DE+G+Q Q +    VA P+P
Sbjct: 955  DYEGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIP 990



 Score = 25.0 bits (52), Expect = 4.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 270  APDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPK 127
            A +G+ V  T   D N     S +  V+   P  + R+ DY+++H P+
Sbjct: 1124 ALEGSAVSKTDDVD-NVVSGHSNVNGVSKSRPNIVERSEDYVISHLPE 1170


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 100 PEDSEHNDPRQRKVDFISSTIRYQYQ*HR*SND 2
           PE  E N P +RK D I  +  Y  +  R  ND
Sbjct: 650 PEALEVNTPIKRKADLIQPSYNYDGEKRRKEND 682


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -3

Query: 359 QWESALNHXDP*RKLIISMFSPSKVNMNTLRLTEPL*SSRIQLTRTDTNHRVSYFQLLLQ 180
           Q E  L   D  + L+ + F+  +  ++ LR    L   RIQ  R + + R   F+  ++
Sbjct: 155 QLEEVLATVDQLQSLVTN-FNDQQDEVDELRERITLKEERIQQMRNEASQRRFEFKTTIE 213

Query: 179 CLKPS 165
           CL+ S
Sbjct: 214 CLEES 218


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
 Frame = -2

Query: 375 LGMKLTMGISAQSXGSXK--KVDNIDVLAIQGQYEYSA----PDGTPVKFTY--TADENG 220
           L   L M +  +   S    K+ ++D+   +  Y  SA    P+ + + F Y  T+D+ G
Sbjct: 641 LSQSLNMAVDFRQSSSLPADKLSSLDI-HFEDDYNSSADEEDPEASDISFQYSNTSDKEG 699

Query: 219 YQPQSELLPVAPPMP--EAIRRAIDYILAHPPKTETVKKL*IQKIQSTTTPAKEKWTLFR 46
              +   +  A  +   E    A  YI     + E  +KL +Q I     P  E W LFR
Sbjct: 700 SSDKDSSIEEASSVKTQENGLNATLYI-----QMEYCEKLSLQDIIRDKIPVDEMWRLFR 754


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
 Frame = -3

Query: 359 QWESALNHXDP*RKLIISMFSPSKV----NMNTLRLTEPL-*SSRIQLTRT-------DT 216
           Q   ALNH     K ++S ++PS V     +  L L + +  SS  +L R+       DT
Sbjct: 506 QLREALNHSSSVTKEVLSQYTPSVVIGVLKLYFLELPDSIVPSSAFELIRSIYMNHSNDT 565

Query: 215 NHRVSYFQ-LLLQCLKPSVALLTTFSLTHL 129
            +R+   Q LL Q  + ++A L+   +THL
Sbjct: 566 PYRLRLLQNLLSQLRRVNLATLSAI-ITHL 594


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 125 PKP*KSYKSRRFRAQRPPPKKSGLYFEHHTLSISI 21
           PKP KS ++  F    PPP  +G     H L+I+I
Sbjct: 50  PKP-KSIEAPMFPILLPPPNITGKLHIGHALTITI 83


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 293 SKVNMNTLRLTEPL*SSRIQLTRTDTNHRV 204
           +++N N +   EP   S I L++T T+H++
Sbjct: 413 NELNNNVVEKAEPAPVSEIPLSKTLTSHKI 442


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 397 DSLXDSAFGYETDNGNQRSIXW 332
           ++L  S+FG + D G QRS  W
Sbjct: 228 NNLLQSSFGDDLDLGMQRSATW 249


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 106 INPEDSEHNDPRQRKVDFISS 44
           I  E S +ND  +RK+DF+SS
Sbjct: 401 IKRELSYYNDATKRKLDFMSS 421


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 239 YVNFTGVPSGAEYSY*PWMARTS 307
           YV+F GV SGA+     W   TS
Sbjct: 382 YVDFRGVGSGADLQKQQWNKSTS 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,587
Number of Sequences: 5004
Number of extensions: 30684
Number of successful extensions: 85
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)