Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F15
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0135 - 14954060-14954156,14955027-14956024 28 2.4
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 28 3.1
07_03_0003 - 12238606-12239336,12239550-12239804,12239886-122399... 27 4.1
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 27 5.5
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748... 27 5.5
06_03_0730 - 23948801-23949079,23949528-23949588,23949828-239499... 27 5.5
01_01_0233 - 1957104-1958041,1958213-1958467,1959420-1960136,196... 27 5.5
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502... 27 7.2
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 27 7.2
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 27 7.2
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 27 7.2
12_02_0751 + 22776979-22777169,22777217-22777496 26 9.5
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 26 9.5
>09_04_0135 - 14954060-14954156,14955027-14956024
Length = 364
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +2
Query: 206 LCGWYPFSSAVYVNFTGVPSGAEYSY*PWM---ARTSILSTFFXDPXD*ALIPIVSFIP 373
LCG+ PF Y AEY PW+ AR I+ DP IP + P
Sbjct: 217 LCGFLPFQHENYAKMYQKIFKAEYQVPPWVSGDARRLIVRLLVVDPAKRISIPEIMRTP 275
>02_05_0336 +
28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -3
Query: 248 SSRIQLTRTDTNHRVSYFQLLLQCLKPSVALLTTFSLTH 132
+S Q ++++ +H S Q+ +C +PS+A + +S+TH
Sbjct: 852 TSEFQQSKSNRDHHNSR-QVDRECTQPSIASMANYSVTH 889
>07_03_0003 -
12238606-12239336,12239550-12239804,12239886-12239988,
12240393-12240713,12241427-12241480,12242134-12242274
Length = 534
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 177 PEAIRRAIDYILAHPPKTETVKKL*IQKIQSTTTPAKEKWTLFRAPYVINI 25
PEA R++ + P KT +KKL I + T A + F AP V N+
Sbjct: 68 PEAFFRSVKPRVVAPQKTLPIKKLAIPVPPTFKTMADKTLREFAAPSVDNV 118
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 231 DENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETV 115
+E Y P S L+ A + AIRR + A PP +
Sbjct: 1869 EEKMYVPNSRLMSCASLLSAAIRRGVAGCRASPPSASAI 1907
>11_04_0154 +
14172294-14172459,14172993-14173054,14174781-14174859,
14174964-14175164,14175420-14175610
Length = 232
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 137 THLRPKP*KSYKSRRFRAQRPPPKKSGLYFEHHTLSISI 21
THL P P + ++R+ R P P SGL F H L I +
Sbjct: 25 THL-PGPRRKPRARQGRPT-PRPDPSGLQFSHAVLEIGV 61
>06_03_0730 -
23948801-23949079,23949528-23949588,23949828-23949954,
23950449-23950485,23950987-23951061,23951489-23951598,
23952700-23952754,23952833-23952949,23953201-23953355,
23953577-23953634,23954239-23954460
Length = 431
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 270 APDGTPVKFTYTADENGYQPQSELLPVAPPMPEAI 166
A G Y +D G P+S L P PP P+ +
Sbjct: 378 ATTGATEGSNYRSDHFGASPRSALAPPPPPSPDLV 412
>01_01_0233 -
1957104-1958041,1958213-1958467,1959420-1960136,
1960728-1961403
Length = 861
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 400 VDSLXDSAFGYETDNGNQRSIXWIXE 323
VD L D GYETD+ +R + + E
Sbjct: 757 VDQLVDPEIGYETDSETKRMVDLVAE 782
>12_02_1007 -
25248653-25249078,25249956-25250021,25250108-25250260,
25250961-25251336,25252001-25252143
Length = 387
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 297 AIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPP 130
++Q Q + + G+P Y A PQS + P PP P + +LA PP
Sbjct: 262 SLQHQLKAMSVVGSPPALLYPA---AVHPQSYMHPPPPPPPVTMPMHPGMVLAAPP 314
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 297 AIQGQYEYSAPDGTPVKFTYTAD 229
+I G Y PD P+ F YTAD
Sbjct: 417 SIDGVYTRDFPDTPPIVFDYTAD 439
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 242 RIQLTRTDTNHRVSYFQLLLQCLKPSVALLTT-FSLTHLRPKP 117
R+++T T+ N+R++Y Q L PS LTT FS + P
Sbjct: 303 RVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIFSFNYKSLNP 345
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 165 RRAIDYILAHPPKTETVKKL*IQKIQSTTTPAKEK 61
RR + +L HP V + + ++ STT P K
Sbjct: 493 RRIVSLLLLHPASPHPVAAISLGRLLSTTAPVSSK 527
>12_02_0751 + 22776979-22777169,22777217-22777496
Length = 156
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 238 IRELHRGSVRRRVFILTLDGENIDIINFLXGS 333
+ + HRG VR+ TLD + I+++L GS
Sbjct: 11 VLQAHRGRVRQFSLSWTLDYNHFFIVDYLLGS 42
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 297 AIQGQYEYSAPDGTPVKFTYTADEN 223
A G Y PD PV F YT DE+
Sbjct: 460 ASAGVYTRDFPDTPPVVFDYTGDES 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,113
Number of Sequences: 37544
Number of extensions: 210755
Number of successful extensions: 567
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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