Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_F15
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily ass...    27   3.7  
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass...    27   3.7  
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass...    27   3.7  
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    27   3.7  
Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 195 PVAPPMPEAIRRAIDYILAHPPKTETVKK 109
           P+ PP+PE I   +  +LA  P   +V K
Sbjct: 57  PIPPPLPEPIPELVQILLAAEPNKPSVPK 85


>U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform b protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -2

Query: 372 GMKLTMGISAQ--SXGSXKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSEL 199
           G+K  +  +AQ  +     KV+NID+     + + +    T    T    E+ ++PQ+++
Sbjct: 254 GVKPFVSRAAQDITHNGESKVENIDLTIELNREQKATVTATKYPRTDFIMEDYHRPQTQI 313

Query: 198 LPVAPPMPEAIRR 160
           L  AP  P +  R
Sbjct: 314 LAPAPKKPNSTTR 326


>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform a protein.
          Length = 1004

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -2

Query: 372 GMKLTMGISAQ--SXGSXKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSEL 199
           G+K  +  +AQ  +     KV+NID+     + + +    T    T    E+ ++PQ+++
Sbjct: 209 GVKPFVSRAAQDITHNGESKVENIDLTIELNREQKATVTATKYPRTDFIMEDYHRPQTQI 268

Query: 198 LPVAPPMPEAIRR 160
           L  AP  P +  R
Sbjct: 269 LAPAPKKPNSTTR 281


>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform c protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -2

Query: 372 GMKLTMGISAQ--SXGSXKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSEL 199
           G+K  +  +AQ  +     KV+NID+     + + +    T    T    E+ ++PQ+++
Sbjct: 304 GVKPFVSRAAQDITHNGESKVENIDLTIELNREQKATVTATKYPRTDFIMEDYHRPQTQI 363

Query: 198 LPVAPPMPEAIRR 160
           L  AP  P +  R
Sbjct: 364 LAPAPKKPNSTTR 376


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = -2

Query: 324 KKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELL---PVAPPMPEAIRRAI 154
           KKVD+I+   +Q   E S+P+  P   T+    +  +P   +    P  PP  +AI  A+
Sbjct: 126 KKVDDIEAAILQAVIESSSPE-PPRSSTHRQRIHRIRPGHRIRPSPPAPPPRVDAIEEAV 184


>Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical
           protein T08G5.2 protein.
          Length = 728

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 246 FTYTADENGYQPQSELLPVAPPMPEAIRRAI 154
           F  +AD+ G + ++E++PV    PEA+ + I
Sbjct: 162 FGLSADKGGTKHRAEMVPVRYMAPEAVEKMI 192


>AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical
           protein Y48G1C.1 protein.
          Length = 454

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 6/23 (26%), Positives = 18/23 (78%)
 Frame = -2

Query: 300 LAIQGQYEYSAPDGTPVKFTYTA 232
           + ++ ++ +S PDG+P+++T ++
Sbjct: 268 ITVKAEFNFSIPDGSPIQWTISS 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,194,913
Number of Sequences: 27780
Number of extensions: 177098
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)