Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_F15
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    82   3e-18
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   0.56 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   0.56 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        20   9.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 81.8 bits (193), Expect = 3e-18
 Identities = 37/78 (47%), Positives = 49/78 (62%)
 Frame = -2

Query: 354 GISAQSXGSXKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMP 175
           GIS Q  G  K+VDN   +  QG   Y+APDG  V  TY ADENG+Q Q   +P APP+P
Sbjct: 51  GISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIP 110

Query: 174 EAIRRAIDYILAHPPKTE 121
             I+RA+++  AHP + +
Sbjct: 111 PEIQRALEWNAAHPEEDD 128


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 182 GGATGSNSLCGWYPFSSA 235
           GGA G+ SLC  YP   A
Sbjct: 122 GGAAGATSLCFVYPLDFA 139


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 182 GGATGSNSLCGWYPFSSA 235
           GGA G+ SLC  YP   A
Sbjct: 122 GGAAGATSLCFVYPLDFA 139


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 355 HCQFHTQKLNPXGNP 399
           H QFH Q+L    NP
Sbjct: 10  HQQFHHQQLFSSANP 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,628
Number of Sequences: 438
Number of extensions: 2541
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)